Geranylgeranyldiphosphate biosynthesis II (plastidic) (WP2211)

Oryza sativa

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In plants the geranyl-geranyl diphosphate (GGPP) as a precursor molecule that feeds in the biosynthesis of essential compounds such as chlorophylls, carotenoids, plastoquinones, growth hormone gibberellin and other secondary metabolites. Occurs in plastids.

Authors

Pankaj Jaiswal and Egon Willighagen

Activity

last edited

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Cited In

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Organisms

Oryza sativa

Communities

Annotations

Cell Type Ontology

obsolete plant cell

Pathway Ontology

diterpenoid biosynthetic pathway

Participants

Label Type Compact URI Comment
Dimethylallyl-PP Metabolite cas:358-71-4
Geranylgeranyl diphosphate Metabolite chebi:15831
Geranyl-PP Metabolite kegg.compound:C00341
Diphosphate Metabolite cas:2466-09-3
Delta3-isopentenyl-PP Metabolite kegg.compound:C00129
trans, trans-farnesyl diphosphate Metabolite cas:13058-04-3
Delta3-isopentenyl-PP Metabolite kegg.compound:C00129
Diphosphate Metabolite cas:2466-09-3
Delta3-isopentenyl-PP Metabolite kegg.compound:C00129
Diphosphate Metabolite cas:2466-09-3
EC:2.5.1.1 (Geranyl-diphosphate synthase) GeneProduct eccode:2.5.1.1
EC:2.5.1.29 (Geranylgeranyl pyrophosphate synthase) GeneProduct eccode:2.5.1.29
LOC_Os08g09370 GeneProduct :LOC_Os08g09370 polyprenyl synthetase, putative, expressed
LOC_Os09g33930 GeneProduct :LOC_Os09g33930 farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed//farnesyltranstransferase
LOC_Os12g17320 GeneProduct :LOC_Os12g17320 polyprenyl synthetase, putative, expressed
LOC_Os07g39270 GeneProduct :LOC_Os07g39270 polyprenyl synthetase, putative, expressed//isoprenoid biosynthetic process//diterpene phytoalexin metabolic process//farnesyltranstransferase
LOC_Os06g46450 GeneProduct :LOC_Os06g46450 polyprenyl synthetase, putative, expressed
LOC_Os05g50550 GeneProduct :LOC_Os05g50550 polyprenyl synthetase, putative, expressed
EC:2.5.1.10 (Farnesyl pyrophosphate synthetase) GeneProduct eccode:2.5.1.10
LOC_Os01g53600 GeneProduct :LOC_Os01g53600 farnesyltransferase subunit beta, putative, expressed//farnesyltranstransferase//protein farnesyltransferase
LOC_OS01G14630 GeneProduct :LOC_OS01G14630 polyprenyl synthetase, putative, expressed//diterpene phytoalexin metabolic process
LOC_Os02g44780 GeneProduct :LOC_Os02g44780 polyprenyl synthetase, putative, expressed//isoprenoid biosynthetic process//diterpene phytoalexin metabolic process//farnesyltranstransferase
LOC_Os04g56230 GeneProduct :LOC_Os04g56230 TRAF-type zinc finger family protein
LOC_Os01g50760 (FPPS) GeneProduct :LOC_Os01g50760 polyprenyl synthetase, putative, expressed
LOC_Os04g56210 GeneProduct :LOC_Os04g56210 polyprenyl synthetase, putative, expressed
LOC_Os01g50050 GeneProduct :LOC_Os01g50050 polyprenyl synthetase, putative, expressed

References

  1. Biosynthesis of rice phytoalexins: identification of putative diterpene hydrocarbon precursors. Wickham KA, West CA. Arch Biochem Biophys. 1992 Mar;293(2):320–32. PubMed Europe PMC Scholia
  2. Cloning of a cDNA that encodes farnesyl diphosphate synthase and the blue-light-induced expression of the corresponding gene in the leaves of rice plants. Sanmiya K, Iwasaki T, Matsuoka M, Miyao M, Yamamoto N. Biochim Biophys Acta. 1997 Feb 28;1350(3):240–6. PubMed Europe PMC Scholia
  3. Localization of farnesyl diphosphate synthase in chloroplasts. Sanmiya K, Ueno O, Matsuoka M, Yamamoto N. Plant Cell Physiol. 1999 Mar;40(3):348–54. PubMed Europe PMC Scholia
  4. Partial characterization of farnesyl and geranylgeranyl diphosphatases induced in rice seedlings by UV-C irradiation. Nah J, Song SJ, Back K. Plant Cell Physiol. 2001 Aug;42(8):864–7. PubMed Europe PMC Scholia
  5. Functional characterization of OsPPT1, which encodes p-hydroxybenzoate polyprenyltransferase involved in ubiquinone biosynthesis in Oryza sativa. Ohara K, Yamamoto K, Hamamoto M, Sasaki K, Yazaki K. Plant Cell Physiol. 2006 May;47(5):581–90. PubMed Europe PMC Scholia
  6. Identification of a biosynthetic gene cluster in rice for momilactones. Shimura K, Okada A, Okada K, Jikumaru Y, Ko KW, Toyomasu T, et al. J Biol Chem. 2007 Nov 23;282(47):34013–8. PubMed Europe PMC Scholia
  7. Comparison of the enzymatic properties of ent-copalyl diphosphate synthases in the biosynthesis of phytoalexins and gibberellins in rice. Hayashi Y, Toyomasu T, Hirose Y, Onodera Y, Mitsuhashi W, Yamane H, et al. Biosci Biotechnol Biochem. 2008 Feb;72(2):523–30. PubMed Europe PMC Scholia