wikipathways-collection

WikiPathways WP848

• WikiPathways: WP848 (classic)
• Species: Pan troglodytes

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: .. all OK!
  • numericHGNCIDs: .. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 9
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 9 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 11 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• Sec2PriProjectTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• UnicodeTests
  • water: .. all OK!
  • calcium: .. all OK!
  • hydron: .. all OK!
  • sodium: .. all OK!
  • potassium: .. all OK!
  • oxygen: .. all OK!
  • carbondioxide: .. all OK!
  • iron2: .. all OK!
  • iron3: .. all OK!
  • copper: .. all OK!
  • copper2: .. all OK!
  • manganese: .. all OK!
  • magnesium: .. all OK!
  • ammonia: .x we found 1 problem(s):
    • Metabolite can use NH₃ instead of NH3: 1
  • chloride: .. all OK!
  • bicarbonate: .. all OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 22
• Number of tests: 147
• Number of assertions: 293
• Number of fails: 2

Fails

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 9

http://classic.wikipathways.org/instance/WP848_r140698 FECH with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP848_r140698 UROS with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP848_r140698 ALAS2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP848_r140698 ALAD with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP848_r140698 ALAS1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP848_r140698 UROD with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP848_r140698 HMBS with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP848_r140698 CPOX with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP848_r140698 PPOX with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping

The ammonia formula can use Unicode

Metabolite can use NH₃ instead of NH3: 1

• http://classic.wikipathways.org/instance/WP848_r140698

More details at https://www.wikipathways.org/WikiPathwaysCurator/UnicodeTests/ammonia