wikipathways-collection

WikiPathways WP5590

• WikiPathways: WP5590 (classic)
• Species: Paullinia cupana

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: .. all OK!
  • numericHGNCIDs: .. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 3
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 9 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests
  • deletedPathways: .. all OK!
  • linksToDeletedPathways: .. all OK!
  • linksToDeletedPathways_All: .. all OK!
  • speciesMismatch: .. all OK!
  • testRoundedRectangle: .. all OK!
  • youMustCite: .. all OK!
  • oldLicenses: .. all OK!
  • mediawikiLinks: .. all OK!
  • allEmptyDescriptions: .. all OK!
  • allShortDescriptions: .x we found 1 problem(s):
    • Pathways of with a very short description: 1
  • multipleDescriptions: .. all OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• Sec2PriProjectTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• UnicodeTests: all 17 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 22
• Number of tests: 148
• Number of assertions: 295
• Number of fails: 2

Fails

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 3

http://classic.wikipathways.org/instance/WP5590_r140770 PcCS2 with datasource Wikidata
http://classic.wikipathways.org/instance/WP5590_r140770 PcCS with datasource Wikidata
http://classic.wikipathways.org/instance/WP5590_r140770 PcCS1 with datasource Wikidata

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping

Pathway description is too short

Pathways of with a very short description: 1

• http://classic.wikipathways.org/instance/WP5590_r140770

More details at https://www.wikipathways.org/WikiPathwaysCurator/PathwayTests/allShortDescriptions