wikipathways-collection
WikiPathways WP5546
- WikiPathways: WP5546 (classic)
- Species: Homo sapiens
- Scholia: WP5546
Tests
- CASMetabolitesTests: all 2 tests OK!
- ChEBIMetabolitesTests: all 5 tests OK!
- ChemSpiderTests: all 2 tests OK!
- DataNodesTests
- dataNodesWithoutIdentifier: .x we found 1 problem(s):
- unknownTypes_knownDatasource: .. all OK!
- unknownTypes: .x we found 1 problem(s):
- unknownTypes_Reactome: .. all OK!
- otherDataSource: .. all OK!
- EnsemblTests: all 4 tests OK!
- GeneTests: all 5 tests OK!
- GeneralTests
- curationAndHypothetical: .. all OK!
- curationAndNeedsWork: .. all OK!
- curationAndReactome: .. all OK!
- dataNodeWithoutGraphId: .. all OK!
- duplicateTitles: .. all OK!
- emptyDataSources: x we found 1 problem(s):
- emptyLabelOfNodeWithIdentifier: .. all OK!
- groupsHaveDetail: .. all OK!
- noTags: .. all OK!
- nullDataSources: .. all OK!
- stockComments: .x we found 1 problem(s):
- titlesShortEnough: .. all OK!
- undefinedDataSources: .. all OK!
- undefinedIdentifier: .. all OK!
- weirdCharacterTitles: .. all OK!
- HMDBSecMetabolitesTests: all 3 tests OK!
- InteractionTests
- noMetaboliteToNonMetaboliteConversions: .. all OK!
- noNonMetaboliteToMetaboliteConversions: .. all OK!
- noGeneProteinConversions: .. all OK!
- nonNumericIDs: .. all OK!
- interactionsWithLabels: .x we found 1 problem(s):
- UnconnectedPoints: .x we found 1 problem(s):
- possibleTranslocations: .. all OK!
- noProteinProteinConversions: .. all OK!
- incorrectKEGGIdentifiers: .. all OK!
- KEGGMetaboliteTests: all 2 tests OK!
- LIPIDMAPSTests: all 1 tests OK!
- MetaboliteStructureTests: all 1 tests OK!
- MetabolitesTests: all 15 tests OK!
- OudatedDataSourcesTests: all 24 tests OK!
- PathwayTests: all 8 tests OK!
- ProteinsTests: all 2 tests OK!
- PubChemMetabolitesTests: all 3 tests OK!
- ReferencesTests: all 6 tests OK!
- UniProtTests: all 5 tests OK!
- UnicodeTests: all 1 tests OK!
- WikidataTests: all 4 tests OK!
Summary
- Number of test classes: 21
- Number of tests: 122
- Number of assertions: 245
- Number of fails: 6
Fails
Data nodes without an identifier
The following DataNodes have no identifier: 7
- http://classic.wikipathways.org/instance/WP5546_r139383 http://rdf.wikipathways.org/Pathway/WP5546_r139383/DataNode/ca16b (40S cytosolic small ribosomal subunit)
- http://classic.wikipathways.org/instance/WP5546_r139383 http://rdf.wikipathways.org/Pathway/WP5546_r139383/DataNode/d07a1 (Clustering of LAMP1-positive Lysosomes)
- http://classic.wikipathways.org/instance/WP5546_r139383 http://rdf.wikipathways.org/Pathway/WP5546_r139383/DataNode/eee1c (E3 ubiquitin ligase complex)
- http://classic.wikipathways.org/instance/WP5546_r139383 http://rdf.wikipathways.org/Pathway/WP5546_r139383/DataNode/c1ad5 (Major Spliceosomal B-act-II complex)
- http://classic.wikipathways.org/instance/WP5546_r139383 http://rdf.wikipathways.org/Pathway/WP5546_r139383/DataNode/b5892 (Pre-BCR Complex)
- http://classic.wikipathways.org/instance/WP5546_r139383 http://rdf.wikipathways.org/Pathway/WP5546_r139383/DataNode/c3f94 (Radial Spoke Complex)
- http://classic.wikipathways.org/instance/WP5546_r139383 http://rdf.wikipathways.org/Pathway/WP5546_r139383/DataNode/c78dd (TDRD3-TOP3B type IA topoisomerase complex)
More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier
Datanodes of unknown type
The following DataNodes have Unknown @Type: 7
- http://classic.wikipathways.org/instance/WP5546_r139383 http://rdf.wikipathways.org/Pathway/WP5546_r139383/DataNode/ca16b (40S cytosolic small ribosomal subunit)
- http://classic.wikipathways.org/instance/WP5546_r139383 http://rdf.wikipathways.org/Pathway/WP5546_r139383/DataNode/d07a1 (Clustering of LAMP1-positive Lysosomes)
- http://classic.wikipathways.org/instance/WP5546_r139383 http://rdf.wikipathways.org/Pathway/WP5546_r139383/DataNode/eee1c (E3 ubiquitin ligase complex)
- http://classic.wikipathways.org/instance/WP5546_r139383 http://rdf.wikipathways.org/Pathway/WP5546_r139383/DataNode/c1ad5 (Major Spliceosomal B-act-II complex)
- http://classic.wikipathways.org/instance/WP5546_r139383 http://rdf.wikipathways.org/Pathway/WP5546_r139383/DataNode/b5892 (Pre-BCR Complex)
- http://classic.wikipathways.org/instance/WP5546_r139383 http://rdf.wikipathways.org/Pathway/WP5546_r139383/DataNode/c3f94 (Radial Spoke Complex)
- http://classic.wikipathways.org/instance/WP5546_r139383 http://rdf.wikipathways.org/Pathway/WP5546_r139383/DataNode/c78dd (TDRD3-TOP3B type IA topoisomerase complex)
More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/unknownTypes
Data nodes with an identifier but an empty data source
Data nodes with a ‘’ data source: 9
- http://www.wikipathways.org/instance/WP5546_r139383 ENSG00000124614 En (RPS10)
- http://www.wikipathways.org/instance/WP5546_r139383 ENSG00000130363 En (RSPH3)
- http://www.wikipathways.org/instance/WP5546_r139383 ENSG00000140988 En (RPS2)
- http://www.wikipathways.org/instance/WP5546_r139383 ENSG00000164587 En (RPS14)
- http://www.wikipathways.org/instance/WP5546_r139383 ENSG00000170889 En (RPS9)
- http://www.wikipathways.org/instance/WP5546_r139383 ENSG00000186468 En (RPS23)
- http://www.wikipathways.org/instance/WP5546_r139383 ENSG00000233927 En (RPS28)
- http://www.wikipathways.org/instance/WP5546_r139383 ENSG00000280831 En (RPS25)
- http://www.wikipathways.org/instance/WP5546_r139383 ENSG00000292158 En (RPS3A)
The pathway contains stock comments
Number of graphical items with the comment “Type your comment here”: 2
- http://www.wikipathways.org/instance/WP5546_r139383 http://rdf.wikipathways.org/Pathway/WP5546_r139383/DataNode/e2df8
- http://www.wikipathways.org/instance/WP5546_r139383 http://rdf.wikipathways.org/Pathway/WP5546_r139383/DataNode/e7a19
More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneralTests/stockComments
Interactions with Labels
Interactions found that involve Labels: 7
- http://classic.wikipathways.org/instance/WP5546_r139383 “Alter DNA and RNA topology” with graphId d4180
- http://classic.wikipathways.org/instance/WP5546_r139383 “Involved in early B-cell development” with graphId fddd6
- http://classic.wikipathways.org/instance/WP5546_r139383 “Unknown function “ with graphId c592e
- http://classic.wikipathways.org/instance/WP5546_r139383 “Degradtion of target protein” with graphId dc292
- http://classic.wikipathways.org/instance/WP5546_r139383 “Involved in craciofacial development” with graphId c9d63
- http://classic.wikipathways.org/instance/WP5546_r139383 “Regulation of glutathione metabolism” with graphId b1fb8
- http://classic.wikipathways.org/instance/WP5546_r139383 “Folding of nascent protein “ with graphId fb581
More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels
Interactions with unconnected points
Interactions with unconnected points: 6
More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/UnconnectedPoints