wikipathways-collection

WikiPathways WP5470

• WikiPathways: WP5470 (classic)
• Species: Homo sapiens
• Scholia: WP5470

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 6 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • UnconnectedPoints: .x we found 1 problem(s):
    • Interactions with unconnected points: 28
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 36
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 11 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• Sec2PriProjectTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• UnicodeTests
  • water: .. all OK!
  • calcium: .. all OK!
  • hydron: .. all OK!
  • sodium: .. all OK!
  • potassium: .. all OK!
  • oxygen: .. all OK!
  • carbondioxide: .. all OK!
  • iron2: .. all OK!
  • iron3: .. all OK!
  • copper: .. all OK!
  • copper2: .. all OK!
  • manganese: .. all OK!
  • magnesium: .. all OK!
  • ammonia: .. all OK!
  • chloride: .x we found 1 problem(s):
    • Metabolite can use Cl⁻ instead of Cl-: 1
  • bicarbonate: .. all OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 22
• Number of tests: 147
• Number of assertions: 293
• Number of fails: 3

Fails

Interactions with unconnected points

Interactions with unconnected points: 28

• http://classic.wikipathways.org/instance/WP5470_r139918

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/UnconnectedPoints

Possible MIM translocation

Interactions between identical nodes: 36

• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/id4a916841 “BID” (https://identifiers.org/ensembl/ENSG00000015475) and BID” (https://identifiers.org/ensembl/ENSG00000015475)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/id4a916841 “BID” (https://identifiers.org/ensembl/ENSG00000015475) and tBID” (https://identifiers.org/ensembl/ENSG00000015475)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/id4a916841 “tBID” (https://identifiers.org/ensembl/ENSG00000015475) and BID” (https://identifiers.org/ensembl/ENSG00000015475)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/id4a916841 “tBID” (https://identifiers.org/ensembl/ENSG00000015475) and tBID” (https://identifiers.org/ensembl/ENSG00000015475)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/fcb5d “Cholesterol” (https://identifiers.org/chebi/CHEBI:16113) and Cholesterol” (https://identifiers.org/chebi/CHEBI:16113)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/id7bac3ede “Cl-“ (https://identifiers.org/pubchem.compound/312) and Cl-“ (https://identifiers.org/pubchem.compound/312)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/f566e “Cl-“ (https://identifiers.org/pubchem.compound/312) and Cl-“ (https://identifiers.org/pubchem.compound/312)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/id3c2a3eda “NTRK2” (https://identifiers.org/ensembl/ENSG00000148053) and NTRK2” (https://identifiers.org/ensembl/ENSG00000148053)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/id3c2a3eda “NTRK2” (https://identifiers.org/ensembl/ENSG00000148053) and TrkB” (https://identifiers.org/ensembl/ENSG00000148053)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/id3c2a3eda “TrkB” (https://identifiers.org/ensembl/ENSG00000148053) and NTRK2” (https://identifiers.org/ensembl/ENSG00000148053)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/id3c2a3eda “TrkB” (https://identifiers.org/ensembl/ENSG00000148053) and TrkB” (https://identifiers.org/ensembl/ENSG00000148053)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/iddf7623d8 “REST/NRSF” (https://identifiers.org/ensembl/ENSG00000084093) and REST/NRSF” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/iddf7623d8 “REST/NRSF” (https://identifiers.org/ensembl/ENSG00000084093) and REST” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/iddf7623d8 “REST/NRSF” (https://identifiers.org/ensembl/ENSG00000084093) and NRSE” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/iddf7623d8 “REST” (https://identifiers.org/ensembl/ENSG00000084093) and REST/NRSF” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/iddf7623d8 “REST” (https://identifiers.org/ensembl/ENSG00000084093) and REST” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/iddf7623d8 “REST” (https://identifiers.org/ensembl/ENSG00000084093) and NRSE” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/iddf7623d8 “NRSE” (https://identifiers.org/ensembl/ENSG00000084093) and REST/NRSF” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/iddf7623d8 “NRSE” (https://identifiers.org/ensembl/ENSG00000084093) and REST” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/iddf7623d8 “NRSE” (https://identifiers.org/ensembl/ENSG00000084093) and NRSE” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/f1df5 “Cl-“ (https://identifiers.org/pubchem.compound/312) and Cl-“ (https://identifiers.org/pubchem.compound/312)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/idf1e0b837 “KCC2” (https://identifiers.org/ensembl/ENSG00000124140) and KCC2” (https://identifiers.org/ensembl/ENSG00000124140)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/iddaa8a622 “BDNF” (https://identifiers.org/ensembl/ENSG00000176697) and BDNF” (https://identifiers.org/ensembl/ENSG00000176697)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/id2f527b2 “GABRA1” (https://identifiers.org/ensembl/ENSG00000022355) and GABRA1” (https://identifiers.org/ensembl/ENSG00000022355)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/id2f527b2 “GABRA1” (https://identifiers.org/ensembl/ENSG00000022355) and GABAaR” (https://identifiers.org/ensembl/ENSG00000022355)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/id2f527b2 “GABAaR” (https://identifiers.org/ensembl/ENSG00000022355) and GABRA1” (https://identifiers.org/ensembl/ENSG00000022355)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/id2f527b2 “GABAaR” (https://identifiers.org/ensembl/ENSG00000022355) and GABAaR” (https://identifiers.org/ensembl/ENSG00000022355)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/ide5a68b27 “REST/NRSF” (https://identifiers.org/ensembl/ENSG00000084093) and REST/NRSF” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/ide5a68b27 “REST/NRSF” (https://identifiers.org/ensembl/ENSG00000084093) and REST” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/ide5a68b27 “REST/NRSF” (https://identifiers.org/ensembl/ENSG00000084093) and NRSE” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/ide5a68b27 “REST” (https://identifiers.org/ensembl/ENSG00000084093) and REST/NRSF” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/ide5a68b27 “REST” (https://identifiers.org/ensembl/ENSG00000084093) and REST” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/ide5a68b27 “REST” (https://identifiers.org/ensembl/ENSG00000084093) and NRSE” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/ide5a68b27 “NRSE” (https://identifiers.org/ensembl/ENSG00000084093) and REST/NRSF” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/ide5a68b27 “NRSE” (https://identifiers.org/ensembl/ENSG00000084093) and REST” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r139918 http://rdf.wikipathways.org/Pathway/WP5470_r139918/WP/Interaction/ide5a68b27 “NRSE” (https://identifiers.org/ensembl/ENSG00000084093) and NRSE” (https://identifiers.org/ensembl/ENSG00000084093)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations

The chloride ion formula can use Unicode

Metabolite can use Cl⁻ instead of Cl-: 1

• http://classic.wikipathways.org/instance/WP5470_r139918

More details at https://www.wikipathways.org/WikiPathwaysCurator/UnicodeTests/chloride