wikipathways-collection

WikiPathways WP5402

• WikiPathways: WP5402 (classic)
• Species: Homo sapiens
• Scholia: WP5402

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 5
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 7
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 3
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 5

http://classic.wikipathways.org/instance/WP5402_r129008 http://rdf.wikipathways.org/Pathway/WP5402_r129008/DataNode/d4c80 (Nuclear mitotic cohesin complex)
http://classic.wikipathways.org/instance/WP5402_r129008 http://rdf.wikipathways.org/Pathway/WP5402_r129008/DataNode/ca31d (PKA)
http://classic.wikipathways.org/instance/WP5402_r129008 http://rdf.wikipathways.org/Pathway/WP5402_r129008/DataNode/da084 (PKC)
http://classic.wikipathways.org/instance/WP5402_r129008 http://rdf.wikipathways.org/Pathway/WP5402_r129008/DataNode/f7167 (Shieldin complex)
http://classic.wikipathways.org/instance/WP5402_r129008 http://rdf.wikipathways.org/Pathway/WP5402_r129008/DataNode/a274b (axonemal radial spoke complex 1 (RS1))

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 7

http://classic.wikipathways.org/instance/WP5402_r129008 "unknown function
possibly involved in
T-cell signalling" with graphId d2d6d
http://classic.wikipathways.org/instance/WP5402_r129008 "spermatogenesis" with graphId b7f5d
http://classic.wikipathways.org/instance/WP5402_r129008 "unknown function
likely microtubule
binding" with graphId ac4da
http://classic.wikipathways.org/instance/WP5402_r129008 "unknown function" with graphId ba677
http://classic.wikipathways.org/instance/WP5402_r129008 "unknown function" with graphId b68fc
http://classic.wikipathways.org/instance/WP5402_r129008 "unknown function" with graphId b8f5c
http://classic.wikipathways.org/instance/WP5402_r129008 "unknown function" with graphId e941f

Possible MIM translocation

Interactions between identical nodes: 3

http://classic.wikipathways.org/instance/WP5402_r129008 http://rdf.wikipathways.org/Pathway/WP5402_r129008/WP/Interaction/idb12b5f83 "Ca2+" (https://identifiers.org/chebi/CHEBI:29108) and 
Ca2+" (https://identifiers.org/chebi/CHEBI:29108)
http://classic.wikipathways.org/instance/WP5402_r129008 http://rdf.wikipathways.org/Pathway/WP5402_r129008/WP/Interaction/id406e906e "K+" (https://identifiers.org/chebi/CHEBI:29103) and 
K+" (https://identifiers.org/chebi/CHEBI:29103)
http://classic.wikipathways.org/instance/WP5402_r129008 http://rdf.wikipathways.org/Pathway/WP5402_r129008/WP/Interaction/idd48a4b6a "H+" (https://identifiers.org/chebi/CHEBI:15378) and 
H+" (https://identifiers.org/chebi/CHEBI:15378)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations