wikipathways-collection

WikiPathways WP5362

• WikiPathways: WP5362 (classic)
• Species: Homo sapiens
• Scholia: WP5362

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 1
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 13
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 1

http://classic.wikipathways.org/instance/WP5362_r127046 http://rdf.wikipathways.org/Pathway/WP5362_r127046/DataNode/ffaba (DNA-directed RNA polymerase III complex, POLR3GL variant)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 13

http://classic.wikipathways.org/instance/WP5362_r127046 "Steroid hormone signalling" with graphId c95c8
http://classic.wikipathways.org/instance/WP5362_r127046 "Traps exon junction complex
onto spliced mRNA" with graphId f20a6
http://classic.wikipathways.org/instance/WP5362_r127046 "Exon junction complex disassembly in 
the cytoplasm and translation 
enhancement of exon junction complex 
bearing spliced mRNA" with graphId e81f9
http://classic.wikipathways.org/instance/WP5362_r127046 "Tumour cell growth" with graphId c7de5
http://classic.wikipathways.org/instance/WP5362_r127046 "Function unknown" with graphId dadcf
http://classic.wikipathways.org/instance/WP5362_r127046 "Probably involved in hydrolysis of 
nucleoside diphosphate derivatives" with graphId e46c9
http://classic.wikipathways.org/instance/WP5362_r127046 "Required for pre-mRNA as 
component of the splicosome" with graphId f418a
http://classic.wikipathways.org/instance/WP5362_r127046 "probably non-functional
pseudogene" with graphId c3eaf
http://classic.wikipathways.org/instance/WP5362_r127046 "Peroxisome proliferation/division" with graphId b9d15
http://classic.wikipathways.org/instance/WP5362_r127046 "Maturation of NK cells" with graphId ee8fe
http://classic.wikipathways.org/instance/WP5362_r127046 "Voltage dependent anion channel required for
acidification and functions of the Golgi apparatus
that may function in counter-ion conductance " with graphId e4661
http://classic.wikipathways.org/instance/WP5362_r127046 "Production of anti-microbial proteins
and inflammatory cytokines" with graphId ffaea
http://classic.wikipathways.org/instance/WP5362_r127046 "Formation of proapoptotic isoforms" with graphId c9630