wikipathways-collection

WikiPathways WP5352

• WikiPathways: WP5352 (classic)
• Species: Homo sapiens
• Scholia: WP5352

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 10
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 2
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 2

Fails

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 10

http://classic.wikipathways.org/instance/WP5352_r128797 "Chondrogenic tissue 
differentiation" with graphId bb579
http://classic.wikipathways.org/instance/WP5352_r128797 "Unknown function" with graphId e345c
http://classic.wikipathways.org/instance/WP5352_r128797 "Unknown function" with graphId a308d
http://classic.wikipathways.org/instance/WP5352_r128797 "Unknown function" with graphId e00f1
http://classic.wikipathways.org/instance/WP5352_r128797 "Unknown function" with graphId e7a3a
http://classic.wikipathways.org/instance/WP5352_r128797 "oxidative
stress" with graphId fee1c
http://classic.wikipathways.org/instance/WP5352_r128797 "Unknown function" with graphId f76c8
http://classic.wikipathways.org/instance/WP5352_r128797 "Involved in
immune system" with graphId d1cea
http://classic.wikipathways.org/instance/WP5352_r128797 "Unknown function" with graphId f0757
http://classic.wikipathways.org/instance/WP5352_r128797 "Unknown function" with graphId ad6fe

Possible MIM translocation

Interactions between identical nodes: 2

http://classic.wikipathways.org/instance/WP5352_r128797 http://rdf.wikipathways.org/Pathway/WP5352_r128797/WP/Interaction/f9d65 "Serotonin" (https://identifiers.org/chebi/CHEBI:350546) and 
Serotonin" (https://identifiers.org/chebi/CHEBI:350546)
http://classic.wikipathways.org/instance/WP5352_r128797 http://rdf.wikipathways.org/Pathway/WP5352_r128797/WP/Interaction/ide9de4542 "Acetylcholine" (https://identifiers.org/chebi/CHEBI:15355) and 
Acetylcholine" (https://identifiers.org/chebi/CHEBI:15355)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations