wikipathways-collection

WikiPathways WP5352

• WikiPathways: WP5352 (classic)
• Species: Homo sapiens
• Scholia: WP5352

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 10
  • UnconnectedPoints: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 2
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 8 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• UnicodeTests
  • water: .x we found 1 problem(s):
    • Metabolite can use H₂O instead of H2O: 1
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 21
• Number of tests: 122
• Number of assertions: 245
• Number of fails: 3

Fails

Interactions with Labels

Interactions found that involve Labels: 10

• http://classic.wikipathways.org/instance/WP5352_r128797 “Chondrogenic tissue differentiation” with graphId bb579
• http://classic.wikipathways.org/instance/WP5352_r128797 “Unknown function” with graphId e345c
• http://classic.wikipathways.org/instance/WP5352_r128797 “Unknown function” with graphId a308d
• http://classic.wikipathways.org/instance/WP5352_r128797 “Unknown function” with graphId e00f1
• http://classic.wikipathways.org/instance/WP5352_r128797 “Unknown function” with graphId e7a3a
• http://classic.wikipathways.org/instance/WP5352_r128797 “oxidative stress” with graphId fee1c
• http://classic.wikipathways.org/instance/WP5352_r128797 “Unknown function” with graphId f76c8
• http://classic.wikipathways.org/instance/WP5352_r128797 “Involved in immune system” with graphId d1cea
• http://classic.wikipathways.org/instance/WP5352_r128797 “Unknown function” with graphId f0757
• http://classic.wikipathways.org/instance/WP5352_r128797 “Unknown function” with graphId ad6fe

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels

Possible MIM translocation

Interactions between identical nodes: 2

• http://classic.wikipathways.org/instance/WP5352_r128797 http://rdf.wikipathways.org/Pathway/WP5352_r128797/WP/Interaction/f9d65 “Serotonin” (https://identifiers.org/chebi/CHEBI:350546) and Serotonin” (https://identifiers.org/chebi/CHEBI:350546)
• http://classic.wikipathways.org/instance/WP5352_r128797 http://rdf.wikipathways.org/Pathway/WP5352_r128797/WP/Interaction/ide9de4542 “Acetylcholine” (https://identifiers.org/chebi/CHEBI:15355) and Acetylcholine” (https://identifiers.org/chebi/CHEBI:15355)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations

Water chemical formula can use Unicode

Metabolite can use H₂O instead of H2O: 1

* [http://classic.wikipathways.org/instance/WP5352_r128797](http://classic.wikipathways.org/instance/WP5352_r128797)

More details at https://www.wikipathways.org/WikiPathwaysCurator/UnicodeTests/water