wikipathways-collection

WikiPathways WP5346

• WikiPathways: WP5346 (classic)
• Species: Homo sapiens
• Scholia: WP5346

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 1
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 23
  • UnconnectedPoints: .. all OK!
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 8 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• UnicodeTests
  • water: .x we found 1 problem(s):
    • Metabolite can use H₂O instead of H2O: 1
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 21
• Number of tests: 122
• Number of assertions: 245
• Number of fails: 3

Fails

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 1

http://classic.wikipathways.org/instance/WP5346_r134457 AP-1 with datasource InterPro

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping

Interactions with Labels

Interactions found that involve Labels: 23

• http://classic.wikipathways.org/instance/WP5346_r134457 “Autophagy” with graphId c9970
• http://classic.wikipathways.org/instance/WP5346_r134457 “Unknown function” with graphId ac6a0
• http://classic.wikipathways.org/instance/WP5346_r134457 “Probably involved in glycogen breakdown” with graphId f76b1
• http://classic.wikipathways.org/instance/WP5346_r134457 “Unknown function” with graphId bbb8b
• http://classic.wikipathways.org/instance/WP5346_r134457 “Telomeres” with graphId a01dd
• http://classic.wikipathways.org/instance/WP5346_r134457 “Unknown function” with graphId e373a
• http://classic.wikipathways.org/instance/WP5346_r134457 “Spindle pole assembly” with graphId acf15
• http://classic.wikipathways.org/instance/WP5346_r134457 “Unknown function” with graphId b6bb6
• http://classic.wikipathways.org/instance/WP5346_r134457 “M1 macrophage polarization” with graphId aed95
• http://classic.wikipathways.org/instance/WP5346_r134457 “Insulin secretion” with graphId afbe3
• http://classic.wikipathways.org/instance/WP5346_r134457 “Cardiac-super-enhancers Cardiac development” with graphId bb26b
• http://classic.wikipathways.org/instance/WP5346_r134457 “Unknown function” with graphId c8390
• http://classic.wikipathways.org/instance/WP5346_r134457 “Telomere shortening” with graphId d9da2
• http://classic.wikipathways.org/instance/WP5346_r134457 “Tight junction “ with graphId e4568
• http://classic.wikipathways.org/instance/WP5346_r134457 “Vesicle traficking” with graphId b55e5
• http://classic.wikipathways.org/instance/WP5346_r134457 “Prometaphase” with graphId aa8ca
• http://classic.wikipathways.org/instance/WP5346_r134457 “Antibacterial activity” with graphId d30ac
• http://classic.wikipathways.org/instance/WP5346_r134457 “Differentiation of photo-receptor cells” with graphId d2acc
• http://classic.wikipathways.org/instance/WP5346_r134457 “Cardiac specific gene expression” with graphId bd448
• http://classic.wikipathways.org/instance/WP5346_r134457 “Unknown function” with graphId bf0ef
• http://classic.wikipathways.org/instance/WP5346_r134457 “Involved in histone regulation” with graphId d7e0b
• http://classic.wikipathways.org/instance/WP5346_r134457 “Unknown function” with graphId cd311
• http://classic.wikipathways.org/instance/WP5346_r134457 “Sugar and nucleotide transporter” with graphId fe9ee

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels

Water chemical formula can use Unicode

Metabolite can use H₂O instead of H2O: 1

* [http://classic.wikipathways.org/instance/WP5346_r134457](http://classic.wikipathways.org/instance/WP5346_r134457)

More details at https://www.wikipathways.org/WikiPathwaysCurator/UnicodeTests/water