wikipathways-collection

WikiPathways WP5343

• WikiPathways: WP5343 (classic)
• Species: Homo sapiens
• Scholia: WP5343

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 6
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 3
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 2
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 6

http://classic.wikipathways.org/instance/WP5343_r126461 http://rdf.wikipathways.org/Pathway/WP5343_r126461/DataNode/f1785 (Absence of Dystrophin)
http://classic.wikipathways.org/instance/WP5343_r126461 http://rdf.wikipathways.org/Pathway/WP5343_r126461/DataNode/dea40 (Inflammatory pathways
)
http://classic.wikipathways.org/instance/WP5343_r126461 http://rdf.wikipathways.org/Pathway/WP5343_r126461/DataNode/b08f7 (Mutation in DMD gene)
http://classic.wikipathways.org/instance/WP5343_r126461 http://rdf.wikipathways.org/Pathway/WP5343_r126461/DataNode/e733c (Myopathy
)
http://classic.wikipathways.org/instance/WP5343_r126461 http://rdf.wikipathways.org/Pathway/WP5343_r126461/DataNode/e4953 (Pathway)
http://classic.wikipathways.org/instance/WP5343_r126461 http://rdf.wikipathways.org/Pathway/WP5343_r126461/DataNode/bd126 (ROS production)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

DataNodesTests.unknownTypes

The following DataNodes have Unknown @Type: 3

http://classic.wikipathways.org/instance/WP5343_r126461 http://rdf.wikipathways.org/Pathway/WP5343_r126461/DataNode/f1785 (Absence of Dystrophin)
http://classic.wikipathways.org/instance/WP5343_r126461 http://rdf.wikipathways.org/Pathway/WP5343_r126461/DataNode/b08f7 (Mutation in DMD gene)
http://classic.wikipathways.org/instance/WP5343_r126461 http://rdf.wikipathways.org/Pathway/WP5343_r126461/DataNode/bd126 (ROS production)

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 2

http://classic.wikipathways.org/instance/WP5343_r126461 "Alteration in 
Ca2+ handling" with graphId f0972
http://classic.wikipathways.org/instance/WP5343_r126461 "Reduced force generation 
during muscle contraction" with graphId c0094