wikipathways-collection

WikiPathways WP5318

• WikiPathways: WP5318 (classic)
• Species: Homo sapiens
• Scholia: WP5318

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 14
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 15
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 14

http://classic.wikipathways.org/instance/WP5318_r125826 http://rdf.wikipathways.org/Pathway/WP5318_r125826/DataNode/a19a6 (AMPK-stimulated GLUT-4)
http://classic.wikipathways.org/instance/WP5318_r125826 http://rdf.wikipathways.org/Pathway/WP5318_r125826/DataNode/b2a6b (CoA)
http://classic.wikipathways.org/instance/WP5318_r125826 http://rdf.wikipathways.org/Pathway/WP5318_r125826/DataNode/b98d2 (Estrogen response element)
http://classic.wikipathways.org/instance/WP5318_r125826 http://rdf.wikipathways.org/Pathway/WP5318_r125826/DataNode/ba872 (Fructose 1, 6-biphosphate)
http://classic.wikipathways.org/instance/WP5318_r125826 http://rdf.wikipathways.org/Pathway/WP5318_r125826/DataNode/d0ee5 (GLUT4)
http://classic.wikipathways.org/instance/WP5318_r125826 http://rdf.wikipathways.org/Pathway/WP5318_r125826/DataNode/ef524 (H20)
http://classic.wikipathways.org/instance/WP5318_r125826 http://rdf.wikipathways.org/Pathway/WP5318_r125826/DataNode/cb651 (Hydrogen peroxide)
http://classic.wikipathways.org/instance/WP5318_r125826 http://rdf.wikipathways.org/Pathway/WP5318_r125826/DataNode/c15a5 (Increased risk of carcinogenesis)
http://classic.wikipathways.org/instance/WP5318_r125826 http://rdf.wikipathways.org/Pathway/WP5318_r125826/DataNode/c8418 (K+)
http://classic.wikipathways.org/instance/WP5318_r125826 http://rdf.wikipathways.org/Pathway/WP5318_r125826/DataNode/cdaff (O2)
http://classic.wikipathways.org/instance/WP5318_r125826 http://rdf.wikipathways.org/Pathway/WP5318_r125826/DataNode/bcd18 (PI3K)
http://classic.wikipathways.org/instance/WP5318_r125826 http://rdf.wikipathways.org/Pathway/WP5318_r125826/DataNode/a1ca1 (RAF/KSR family kinases)
http://classic.wikipathways.org/instance/WP5318_r125826 http://rdf.wikipathways.org/Pathway/WP5318_r125826/DataNode/cfa71 (Superoxide radical
)
http://classic.wikipathways.org/instance/WP5318_r125826 http://rdf.wikipathways.org/Pathway/WP5318_r125826/DataNode/e9dbb (TF)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

DataNodesTests.unknownTypes

The following DataNodes have Unknown @Type: 15

http://classic.wikipathways.org/instance/WP5318_r125826 http://rdf.wikipathways.org/Pathway/WP5318_r125826/DataNode/bbd5e (11-deoxycortisol)
http://classic.wikipathways.org/instance/WP5318_r125826 http://rdf.wikipathways.org/Pathway/WP5318_r125826/DataNode/d8aa8 (11B-HSD1)
http://classic.wikipathways.org/instance/WP5318_r125826 http://rdf.wikipathways.org/Pathway/WP5318_r125826/DataNode/d1248 (17OH-progesterone)
http://classic.wikipathways.org/instance/WP5318_r125826 http://rdf.wikipathways.org/Pathway/WP5318_r125826/DataNode/a54c1 (21-hydrolase)
http://classic.wikipathways.org/instance/WP5318_r125826 http://rdf.wikipathways.org/Pathway/WP5318_r125826/DataNode/d6a00 (Ca2+)
http://classic.wikipathways.org/instance/WP5318_r125826 http://rdf.wikipathways.org/Pathway/WP5318_r125826/DataNode/bac6a (Catalase)
http://classic.wikipathways.org/instance/WP5318_r125826 http://rdf.wikipathways.org/Pathway/WP5318_r125826/DataNode/c7a78 (Cortisol)
http://classic.wikipathways.org/instance/WP5318_r125826 http://rdf.wikipathways.org/Pathway/WP5318_r125826/DataNode/f4673 (Cortisol)
http://classic.wikipathways.org/instance/WP5318_r125826 http://rdf.wikipathways.org/Pathway/WP5318_r125826/DataNode/bb14d (Glucocoticoid receptor)
http://classic.wikipathways.org/instance/WP5318_r125826 http://rdf.wikipathways.org/Pathway/WP5318_r125826/DataNode/e2ecd (Glucocoticoid response elements
)
http://classic.wikipathways.org/instance/WP5318_r125826 http://rdf.wikipathways.org/Pathway/WP5318_r125826/DataNode/c15a5 (Increased risk of carcinogenesis)
http://classic.wikipathways.org/instance/WP5318_r125826 http://rdf.wikipathways.org/Pathway/WP5318_r125826/DataNode/cd393 (Inhibition of IL-6)
http://classic.wikipathways.org/instance/WP5318_r125826 http://rdf.wikipathways.org/Pathway/WP5318_r125826/DataNode/f246b (Inhibition of IL1-B)
http://classic.wikipathways.org/instance/WP5318_r125826 http://rdf.wikipathways.org/Pathway/WP5318_r125826/DataNode/c8418 (K+)
http://classic.wikipathways.org/instance/WP5318_r125826 http://rdf.wikipathways.org/Pathway/WP5318_r125826/DataNode/f7531 (SOD2)