wikipathways-collection

WikiPathways WP5304

• WikiPathways: WP5304 (classic)
• Species: Homo sapiens
• Scholia: WP5304

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 1
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 21
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 20
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 1

http://classic.wikipathways.org/instance/WP5304_r129477 http://rdf.wikipathways.org/Pathway/WP5304_r129477/DataNode/dd403 (lipid droplet)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 21

http://classic.wikipathways.org/instance/WP5304_r129477 "Pre-Chylomicron" with graphId c8ba7
http://classic.wikipathways.org/instance/WP5304_r129477 "Degradation" with graphId a3c89
http://classic.wikipathways.org/instance/WP5304_r129477 "VLDL Degradation" with graphId fb511
http://classic.wikipathways.org/instance/WP5304_r129477 "Dihydro-ff-MAS" with graphId cf02d
http://classic.wikipathways.org/instance/WP5304_r129477 "Dihydro-ff-MAS" with graphId a41ec
http://classic.wikipathways.org/instance/WP5304_r129477 "ff-MAS" with graphId fa3f2
http://classic.wikipathways.org/instance/WP5304_r129477 "Dehydrodesmosterol" with graphId a4caf
http://classic.wikipathways.org/instance/WP5304_r129477 "Bile" with graphId df5af
http://classic.wikipathways.org/instance/WP5304_r129477 "Dehydrodesmosterol" with graphId a4238
http://classic.wikipathways.org/instance/WP5304_r129477 "Dehydrolathosterol" with graphId f040c
http://classic.wikipathways.org/instance/WP5304_r129477 "ff-MAS" with graphId a5b79
http://classic.wikipathways.org/instance/WP5304_r129477 "t-MAS" with graphId cd36a
http://classic.wikipathways.org/instance/WP5304_r129477 "Dihydro-t-MAS" with graphId cbb65
http://classic.wikipathways.org/instance/WP5304_r129477 "Dehydrolathosterol" with graphId c596e
http://classic.wikipathways.org/instance/WP5304_r129477 "t-MAS" with graphId d7b7f
http://classic.wikipathways.org/instance/WP5304_r129477 "Dihydro-t-MAS" with graphId a4606
http://classic.wikipathways.org/instance/WP5304_r129477 "Pre-Chylomicron" with graphId ade58
http://classic.wikipathways.org/instance/WP5304_r129477 "Peripheral tissue" with graphId b0033
http://classic.wikipathways.org/instance/WP5304_r129477 "Degradation" with graphId c16e2
http://classic.wikipathways.org/instance/WP5304_r129477 "Secreted" with graphId d90ef
http://classic.wikipathways.org/instance/WP5304_r129477 "Steroid biosynthesis" with graphId cc275

Possible MIM translocation

Interactions between identical nodes: 20

http://classic.wikipathways.org/instance/WP5304_r129477 http://rdf.wikipathways.org/Pathway/WP5304_r129477/WP/Interaction/idada8b9e3 "cholesterol" (https://identifiers.org/chebi/CHEBI:16113) and 
cholesterol" (https://identifiers.org/chebi/CHEBI:16113)
http://classic.wikipathways.org/instance/WP5304_r129477 http://rdf.wikipathways.org/Pathway/WP5304_r129477/WP/Interaction/id47f4791d "cholesterol" (https://identifiers.org/chebi/CHEBI:16113) and 
cholesterol" (https://identifiers.org/chebi/CHEBI:16113)
http://classic.wikipathways.org/instance/WP5304_r129477 http://rdf.wikipathways.org/Pathway/WP5304_r129477/WP/Interaction/cf303 "cholesterol" (https://identifiers.org/chebi/CHEBI:16113) and 
cholesterol" (https://identifiers.org/chebi/CHEBI:16113)
http://classic.wikipathways.org/instance/WP5304_r129477 http://rdf.wikipathways.org/Pathway/WP5304_r129477/WP/Interaction/idfec7a06b "cholesterol esters" (https://identifiers.org/chebi/CHEBI:17002) and 
cholesterol esters" (https://identifiers.org/chebi/CHEBI:17002)
http://classic.wikipathways.org/instance/WP5304_r129477 http://rdf.wikipathways.org/Pathway/WP5304_r129477/WP/Interaction/id9f02ae1 "cholesterol" (https://identifiers.org/chebi/CHEBI:16113) and 
cholesterol" (https://identifiers.org/chebi/CHEBI:16113)
http://classic.wikipathways.org/instance/WP5304_r129477 http://rdf.wikipathways.org/Pathway/WP5304_r129477/WP/Interaction/id7e771287 "fatty acids" (https://identifiers.org/chebi/CHEBI:35366) and 
fatty acids" (https://identifiers.org/chebi/CHEBI:35366)
http://classic.wikipathways.org/instance/WP5304_r129477 http://rdf.wikipathways.org/Pathway/WP5304_r129477/WP/Interaction/b42a7 "cholesterol" (https://identifiers.org/chebi/CHEBI:16113) and 
cholesterol" (https://identifiers.org/chebi/CHEBI:16113)
http://classic.wikipathways.org/instance/WP5304_r129477 http://rdf.wikipathways.org/Pathway/WP5304_r129477/WP/Interaction/b8753 "cholesterol" (https://identifiers.org/chebi/CHEBI:16113) and 
cholesterol" (https://identifiers.org/chebi/CHEBI:16113)
http://classic.wikipathways.org/instance/WP5304_r129477 http://rdf.wikipathways.org/Pathway/WP5304_r129477/WP/Interaction/id8fdc1aa4 "cholesterol" (https://identifiers.org/chebi/CHEBI:16113) and 
cholesterol" (https://identifiers.org/chebi/CHEBI:16113)
http://classic.wikipathways.org/instance/WP5304_r129477 http://rdf.wikipathways.org/Pathway/WP5304_r129477/WP/Interaction/id881db5bd "fatty acids" (https://identifiers.org/chebi/CHEBI:35366) and 
fatty acids" (https://identifiers.org/chebi/CHEBI:35366)
http://classic.wikipathways.org/instance/WP5304_r129477 http://rdf.wikipathways.org/Pathway/WP5304_r129477/WP/Interaction/id844b6976 "cholesterol esters" (https://identifiers.org/chebi/CHEBI:17002) and 
cholesterol esters" (https://identifiers.org/chebi/CHEBI:17002)
http://classic.wikipathways.org/instance/WP5304_r129477 http://rdf.wikipathways.org/Pathway/WP5304_r129477/WP/Interaction/f6e1e "Cholesterol" (https://identifiers.org/cas/57-88-5) and 
cholesterol" (https://identifiers.org/chebi/CHEBI:16113)
http://classic.wikipathways.org/instance/WP5304_r129477 http://rdf.wikipathways.org/Pathway/WP5304_r129477/WP/Interaction/id5be0a932 "cholesterol" (https://identifiers.org/chebi/CHEBI:16113) and 
cholesterol" (https://identifiers.org/chebi/CHEBI:16113)
http://classic.wikipathways.org/instance/WP5304_r129477 http://rdf.wikipathways.org/Pathway/WP5304_r129477/WP/Interaction/idce0527a6 "fatty acids" (https://identifiers.org/chebi/CHEBI:35366) and 
fatty acids" (https://identifiers.org/chebi/CHEBI:35366)
http://classic.wikipathways.org/instance/WP5304_r129477 http://rdf.wikipathways.org/Pathway/WP5304_r129477/WP/Interaction/id2799a7a2 "lysophospholipids" (https://identifiers.org/chebi/CHEBI:16961) and 
lysophospholipids" (https://identifiers.org/chebi/CHEBI:16961)
http://classic.wikipathways.org/instance/WP5304_r129477 http://rdf.wikipathways.org/Pathway/WP5304_r129477/WP/Interaction/ida3b2a4d6 "cholesterol" (https://identifiers.org/chebi/CHEBI:16113) and 
cholesterol" (https://identifiers.org/chebi/CHEBI:16113)
http://classic.wikipathways.org/instance/WP5304_r129477 http://rdf.wikipathways.org/Pathway/WP5304_r129477/WP/Interaction/b07e5 "cholesterol" (https://identifiers.org/chebi/CHEBI:16113) and 
cholesterol" (https://identifiers.org/chebi/CHEBI:16113)
http://classic.wikipathways.org/instance/WP5304_r129477 http://rdf.wikipathways.org/Pathway/WP5304_r129477/WP/Interaction/idf2dcfcf5 "Cholesterol" (https://identifiers.org/cas/57-88-5) and 
cholesterol" (https://identifiers.org/chebi/CHEBI:16113)
http://classic.wikipathways.org/instance/WP5304_r129477 http://rdf.wikipathways.org/Pathway/WP5304_r129477/WP/Interaction/id459b6ba9 "cholesterol" (https://identifiers.org/chebi/CHEBI:16113) and 
cholesterol" (https://identifiers.org/chebi/CHEBI:16113)
http://classic.wikipathways.org/instance/WP5304_r129477 http://rdf.wikipathways.org/Pathway/WP5304_r129477/WP/Interaction/id7c9d26e1 "fatty acids" (https://identifiers.org/chebi/CHEBI:35366) and 
fatty acids" (https://identifiers.org/chebi/CHEBI:35366)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations