wikipathways-collection

WikiPathways WP5290

• WikiPathways: WP5290 (classic)
• Species: Anopheles gambiae

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 58
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 2
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests
  • nonNumericPubMedIDs: .. all OK!
  • unexpectedPubMedIdentifier: .. all OK!
  • zeroPubMedIDs: .. all OK!
  • atLeastOneReference: .x we found 1 problem(s):
    • Found 1 pathways with zero (PubMed) references
  • citesRetractedArticle: .. all OK!
  • outdatedPubMedIdentifiers: .. all OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 58

http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/e9f62 (1-acyl-DHAP)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/c62f8 (1-alkyl-DHAP)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/b2d8c (A4GALT)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/de044 (AGPS)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/e88a7 (AcylCoA)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/df1ec (B4GALNT1)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/c1f73 (B4GALT1)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/f64b1 (B4GALT5)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/c9c64 (B4GALT6)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/cc4b8 (CL)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/e8c59 (Cer)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/ab21d (DG)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/de512 (DHAP)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/e7b10 (ER)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/e8d42 (EtherCL)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/e3e29 (EtherDG)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/e7739 (EtherPA)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/a7534 (EtherPC)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/bba89 (EtherPE)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/b1d87 (EtherPG)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/defc9 (EtherPI)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/a0a8a (EtherPS)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/b6ea2 (EtherTG)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/e2a80 (FAR1)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/f5bc1 (FAR2)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/bb57f (Fatty alcohol)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/b13e9 (G3P)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/c617f (GAL3ST1)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/c26ff (GD1a)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/f6a25 (GM1)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/f7a0a (GM3)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/dc13d (GNPAT)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/acb61 (GPAT1)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/db932 (GPAT2)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/b2402 (GPAT3)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/de6a7 (GPAT4)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/c1588 (Hex2Cer)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/d8f4e (Hex3Cer)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/d2f0e (HexCer)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/f590e (LIPIN1)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/c6bb0 (LIPIN2)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/ab2f5 (LIPIN3)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/acefc (LPA)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/b6b74 (LPAAT1)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/ed374 (LPAAT2)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/e7b14 (Mitocondoria)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/a7634 (PA)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/d0570 (PC)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/c0823 (PE)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/cef47 (PG)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/ba9c7 (PI)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/a7c12 (PS)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/d9a2a (SHexCer)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/b4729 (ST3GAL2)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/e0fba (ST3GAL6)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/c2fb4 (TG)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/e1b27 (UGCG)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/e8ba9 (UGT8)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

DataNodesTests.unknownTypes

The following DataNodes have Unknown @Type: 2

http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/e7b10 (ER)
http://classic.wikipathways.org/instance/WP5290_r124969 http://rdf.wikipathways.org/Pathway/WP5290_r124969/DataNode/e7b14 (Mitocondoria)

At least one reference

Found 1 pathways with zero (PubMed) references

* [http://classic.wikipathways.org/instance/WP5290_r124969](http://classic.wikipathways.org/instance/WP5290_r124969) 'Lipid remodeling' in Anopheles gambiae has zero references; 

More details at https://www.wikipathways.org/WikiPathwaysCurator/ReferencesTests/atLeastOneReference