wikipathways-collection

WikiPathways WP5237

• WikiPathways: WP5237
• Scholia: WP5237

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 4 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 17
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 2
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 97
• Number of assertions: 196
• Number of fails: 2

Fails

DataNodesTests.dataNodesWithoutIdentifier

The following DataNodes have no identifier: 17

http://classic.wikipathways.org/instance/WP5237_rr124088 http://rdf.wikipathways.org/Pathway/WP5237_rr124088/DataNode/a5d9b ()
http://classic.wikipathways.org/instance/WP5237_rr124088 http://rdf.wikipathways.org/Pathway/WP5237_rr124088/DataNode/d1f43 ()
http://classic.wikipathways.org/instance/WP5237_rr124088 http://rdf.wikipathways.org/Pathway/WP5237_rr124088/DataNode/d7ac4 ()
http://classic.wikipathways.org/instance/WP5237_rr124088 http://rdf.wikipathways.org/Pathway/WP5237_rr124088/DataNode/da29a ()
http://classic.wikipathways.org/instance/WP5237_rr124088 http://rdf.wikipathways.org/Pathway/WP5237_rr124088/DataNode/f8f1e (ATPC)
http://classic.wikipathways.org/instance/WP5237_rr124088 http://rdf.wikipathways.org/Pathway/WP5237_rr124088/DataNode/c302a (GlcT-1)
http://classic.wikipathways.org/instance/WP5237_rr124088 http://rdf.wikipathways.org/Pathway/WP5237_rr124088/DataNode/feb2c (Glycolysis)
http://classic.wikipathways.org/instance/WP5237_rr124088 http://rdf.wikipathways.org/Pathway/WP5237_rr124088/DataNode/a5620 (Glycospingolipids
biosynthesis)
http://classic.wikipathways.org/instance/WP5237_rr124088 http://rdf.wikipathways.org/Pathway/WP5237_rr124088/DataNode/cda48 (Lipid metabolism)
http://classic.wikipathways.org/instance/WP5237_rr124088 http://rdf.wikipathways.org/Pathway/WP5237_rr124088/DataNode/edb3b (Metabolite)
http://classic.wikipathways.org/instance/WP5237_rr124088 http://rdf.wikipathways.org/Pathway/WP5237_rr124088/DataNode/fef83 (Sphingolipids biogenesis)
http://classic.wikipathways.org/instance/WP5237_rr124088 http://rdf.wikipathways.org/Pathway/WP5237_rr124088/DataNode/f7527 (Starch and sucrose metabolism)
http://classic.wikipathways.org/instance/WP5237_rr124088 http://rdf.wikipathways.org/Pathway/WP5237_rr124088/DataNode/d25eb (Tryptophan metabolism)
http://classic.wikipathways.org/instance/WP5237_rr124088 http://rdf.wikipathways.org/Pathway/WP5237_rr124088/DataNode/c71fa (cDASE)
http://classic.wikipathways.org/instance/WP5237_rr124088 http://rdf.wikipathways.org/Pathway/WP5237_rr124088/DataNode/ceedd (lace)
http://classic.wikipathways.org/instance/WP5237_rr124088 http://rdf.wikipathways.org/Pathway/WP5237_rr124088/DataNode/cfea1 (ldh)
http://classic.wikipathways.org/instance/WP5237_rr124088 http://rdf.wikipathways.org/Pathway/WP5237_rr124088/DataNode/df5c2 (ldh)

InteractionTests.possibleTranslocations

Interactions between identical nodes: 2

http://classic.wikipathways.org/instance/WP5237_rr124088 http://rdf.wikipathways.org/Pathway/WP5237_rr124088/WP/Interaction/a533e "tryptamine" (https://identifiers.org/chebi/CHEBI:16765) and 
tryptamine" (https://identifiers.org/chebi/CHEBI:16765)
http://classic.wikipathways.org/instance/WP5237_rr124088 http://rdf.wikipathways.org/Pathway/WP5237_rr124088/WP/Interaction/id5ff1117f "tryptamine" (https://identifiers.org/chebi/CHEBI:16765) and 
tryptamine" (https://identifiers.org/chebi/CHEBI:16765)

More details at https://wikipathways.github.io/WikiPathwaysCurator/InteractionTests/possibleTranslocations