wikipathways-collection

WikiPathways WP5233

• WikiPathways: WP5233 (classic)
• Species: Homo sapiens
• Scholia: WP5233

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 2
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 2
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 1
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests
  • nonNumericPubMedIDs: .. all OK!
  • unexpectedPubMedIdentifier: .. all OK!
  • zeroPubMedIDs: .. all OK!
  • atLeastOneReference: .x we found 1 problem(s):
    • Found 1 pathways with zero (PubMed) references
  • citesRetractedArticle: .. all OK!
  • outdatedPubMedIdentifiers: .. all OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 4

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 2

http://classic.wikipathways.org/instance/WP5233_r129331 http://rdf.wikipathways.org/Pathway/WP5233_r129331/DataNode/b927f (Activation of oncogenic pathways)
http://classic.wikipathways.org/instance/WP5233_r129331 http://rdf.wikipathways.org/Pathway/WP5233_r129331/DataNode/e4018 (Mitochondrial dysfunction)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

DataNodesTests.unknownTypes

The following DataNodes have Unknown @Type: 2

http://classic.wikipathways.org/instance/WP5233_r129331 http://rdf.wikipathways.org/Pathway/WP5233_r129331/DataNode/b927f (Activation of oncogenic pathways)
http://classic.wikipathways.org/instance/WP5233_r129331 http://rdf.wikipathways.org/Pathway/WP5233_r129331/DataNode/e4018 (Mitochondrial dysfunction)

Possible MIM translocation

Interactions between identical nodes: 1

http://classic.wikipathways.org/instance/WP5233_r129331 http://rdf.wikipathways.org/Pathway/WP5233_r129331/WP/Interaction/id848e30e1 "H2O2" (https://identifiers.org/chebi/CHEBI:16240) and 
H2O2" (https://identifiers.org/chebi/CHEBI:16240)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations

At least one reference

Found 1 pathways with zero (PubMed) references

* [http://classic.wikipathways.org/instance/WP5233_r129331](http://classic.wikipathways.org/instance/WP5233_r129331) 'Arsenic metabolism and reactive oxygen species generation' in Homo sapiens has zero references; 

More details at https://www.wikipathways.org/WikiPathwaysCurator/ReferencesTests/atLeastOneReference