wikipathways-collection

WikiPathways WP5196

• WikiPathways: WP5196 (classic)
• Species: Ovis aries

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: .. all OK!
  • numericHGNCIDs: .. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 9
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • UnconnectedPoints: .x we found 1 problem(s):
    • Interactions with unconnected points: 2
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 11 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• Sec2PriProjectTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• UnicodeTests: all 16 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 22
• Number of tests: 147
• Number of assertions: 293
• Number of fails: 2

Fails

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 9

http://classic.wikipathways.org/instance/WP5196_r139901 LOC114113140 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP5196_r139901 RPN1 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5196_r139901 MGAT3 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP5196_r139901 ALG14 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5196_r139901 ALG11 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5196_r139901 MGAT4C with datasource UniProtKB
http://classic.wikipathways.org/instance/WP5196_r139901 ST6GAL2 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP5196_r139901 ALG2 with datasource NCBI Protein
http://classic.wikipathways.org/instance/WP5196_r139901 MAN1B1 with datasource UniProtKB

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping

Interactions with unconnected points

Interactions with unconnected points: 2

• http://classic.wikipathways.org/instance/WP5196_r139901

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/UnconnectedPoints