wikipathways-collection

WikiPathways WP5166

• WikiPathways: WP5166 (classic)
• Species: Homo sapiens
• Scholia: WP5166

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 8
  • UnconnectedPoints: .x we found 1 problem(s):
    • Interactions with unconnected points: 4
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 9
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 8 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 121
• Number of assertions: 243
• Number of fails: 3

Fails

Interactions with Labels

Interactions found that involve Labels: 8

• http://classic.wikipathways.org/instance/WP5166_r136362 “Secondary hyperoxaluria” with graphId b7761
• http://classic.wikipathways.org/instance/WP5166_r136362 “Blood” with graphId fa818
• http://classic.wikipathways.org/instance/WP5166_r136362 “Tissue deposition and CaOx kidney stones” with graphId f0675
• http://classic.wikipathways.org/instance/WP5166_r136362 “Kidney” with graphId ea841
• http://classic.wikipathways.org/instance/WP5166_r136362 “Primary hyperoxaluria II” with graphId f625c
• http://classic.wikipathways.org/instance/WP5166_r136362 “Primary hyperoxaluria I” with graphId b66bd
• http://classic.wikipathways.org/instance/WP5166_r136362 “Primary hyperoxaluria III” with graphId b8675
• http://classic.wikipathways.org/instance/WP5166_r136362 “Primary hyperoxaluria II” with graphId eb383

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels

Interactions with unconnected points

Interactions with unconnected points: 4

• http://classic.wikipathways.org/instance/WP5166_r136362

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/UnconnectedPoints

Possible MIM translocation

Interactions between identical nodes: 9

• http://classic.wikipathways.org/instance/WP5166_r136362 http://rdf.wikipathways.org/Pathway/WP5166_r136362/WP/Interaction/e9259 “Glyoxylate” (https://identifiers.org/chebi/CHEBI:36655) and Glyoxylate” (https://identifiers.org/chebi/CHEBI:36655)
• http://classic.wikipathways.org/instance/WP5166_r136362 http://rdf.wikipathways.org/Pathway/WP5166_r136362/WP/Interaction/fbc58 “Oxalate” (https://identifiers.org/chebi/CHEBI:30623) and Oxalate” (https://identifiers.org/chebi/CHEBI:30623)
• http://classic.wikipathways.org/instance/WP5166_r136362 http://rdf.wikipathways.org/Pathway/WP5166_r136362/WP/Interaction/f8eb1 “Glycolate” (https://identifiers.org/chebi/CHEBI:29805) and Glycolate” (https://identifiers.org/chebi/CHEBI:29805)
• http://classic.wikipathways.org/instance/WP5166_r136362 http://rdf.wikipathways.org/Pathway/WP5166_r136362/WP/Interaction/e2679 “HOG” (https://identifiers.org/chebi/CHEBI:17742) and HOG” (https://identifiers.org/chebi/CHEBI:17742)
• http://classic.wikipathways.org/instance/WP5166_r136362 http://rdf.wikipathways.org/Pathway/WP5166_r136362/WP/Interaction/b6598 “3-hydroxypyruvate” (https://identifiers.org/chebi/CHEBI:17180) and 3-hydroxypyruvate” (https://identifiers.org/chebi/CHEBI:17180)
• http://classic.wikipathways.org/instance/WP5166_r136362 http://rdf.wikipathways.org/Pathway/WP5166_r136362/WP/Interaction/fbc9b “Glycolate” (https://identifiers.org/chebi/CHEBI:29805) and Glycolate” (https://identifiers.org/chebi/CHEBI:29805)
• http://classic.wikipathways.org/instance/WP5166_r136362 http://rdf.wikipathways.org/Pathway/WP5166_r136362/WP/Interaction/e8e75 “Glyoxylate” (https://identifiers.org/chebi/CHEBI:36655) and Glyoxylate” (https://identifiers.org/chebi/CHEBI:36655)
• http://classic.wikipathways.org/instance/WP5166_r136362 http://rdf.wikipathways.org/Pathway/WP5166_r136362/WP/Interaction/ae961 “Hydroxyproline” (https://identifiers.org/chebi/CHEBI:18095) and Hydroxyproline” (https://identifiers.org/chebi/CHEBI:18095)
• http://classic.wikipathways.org/instance/WP5166_r136362 http://rdf.wikipathways.org/Pathway/WP5166_r136362/WP/Interaction/fd795 “Oxalate” (https://identifiers.org/chebi/CHEBI:30623) and Oxalate” (https://identifiers.org/chebi/CHEBI:30623)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations