wikipathways-collection

WikiPathways WP5166

• WikiPathways: WP5166 (classic)
• Species: Homo sapiens
• Scholia: WP5166

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 8
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 9
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 2

Fails

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 8

http://classic.wikipathways.org/instance/WP5166_r128248 "Primary hyperoxaluria II" with graphId f625c
http://classic.wikipathways.org/instance/WP5166_r128248 "Kidney" with graphId ea841
http://classic.wikipathways.org/instance/WP5166_r128248 "Blood" with graphId fa818
http://classic.wikipathways.org/instance/WP5166_r128248 "Primary hyperoxaluria II" with graphId eb383
http://classic.wikipathways.org/instance/WP5166_r128248 "Secondary hyperoxaluria" with graphId b7761
http://classic.wikipathways.org/instance/WP5166_r128248 "Primary hyperoxaluria III" with graphId b8675
http://classic.wikipathways.org/instance/WP5166_r128248 "Primary hyperoxaluria I" with graphId b66bd
http://classic.wikipathways.org/instance/WP5166_r128248 "Tissue deposition and CaOx kidney stones" with graphId f0675

Possible MIM translocation

Interactions between identical nodes: 9

http://classic.wikipathways.org/instance/WP5166_r128248 http://rdf.wikipathways.org/Pathway/WP5166_r128248/WP/Interaction/fd795 "Oxalate" (https://identifiers.org/chebi/CHEBI:30623) and 
Oxalate" (https://identifiers.org/chebi/CHEBI:30623)
http://classic.wikipathways.org/instance/WP5166_r128248 http://rdf.wikipathways.org/Pathway/WP5166_r128248/WP/Interaction/f8eb1 "Glycolate" (https://identifiers.org/chebi/CHEBI:29805) and 
Glycolate" (https://identifiers.org/chebi/CHEBI:29805)
http://classic.wikipathways.org/instance/WP5166_r128248 http://rdf.wikipathways.org/Pathway/WP5166_r128248/WP/Interaction/fbc9b "Glycolate" (https://identifiers.org/chebi/CHEBI:29805) and 
Glycolate" (https://identifiers.org/chebi/CHEBI:29805)
http://classic.wikipathways.org/instance/WP5166_r128248 http://rdf.wikipathways.org/Pathway/WP5166_r128248/WP/Interaction/b6598 "3-hydroxypyruvate" (https://identifiers.org/chebi/CHEBI:17180) and 
3-hydroxypyruvate" (https://identifiers.org/chebi/CHEBI:17180)
http://classic.wikipathways.org/instance/WP5166_r128248 http://rdf.wikipathways.org/Pathway/WP5166_r128248/WP/Interaction/fbc58 "Oxalate" (https://identifiers.org/chebi/CHEBI:30623) and 
Oxalate" (https://identifiers.org/chebi/CHEBI:30623)
http://classic.wikipathways.org/instance/WP5166_r128248 http://rdf.wikipathways.org/Pathway/WP5166_r128248/WP/Interaction/e2679 "HOG" (https://identifiers.org/chebi/CHEBI:17742) and 
HOG" (https://identifiers.org/chebi/CHEBI:17742)
http://classic.wikipathways.org/instance/WP5166_r128248 http://rdf.wikipathways.org/Pathway/WP5166_r128248/WP/Interaction/ae961 "Hydroxyproline" (https://identifiers.org/chebi/CHEBI:18095) and 
Hydroxyproline" (https://identifiers.org/chebi/CHEBI:18095)
http://classic.wikipathways.org/instance/WP5166_r128248 http://rdf.wikipathways.org/Pathway/WP5166_r128248/WP/Interaction/e8e75 "Glyoxylate" (https://identifiers.org/chebi/CHEBI:36655) and 
Glyoxylate" (https://identifiers.org/chebi/CHEBI:36655)
http://classic.wikipathways.org/instance/WP5166_r128248 http://rdf.wikipathways.org/Pathway/WP5166_r128248/WP/Interaction/e9259 "Glyoxylate" (https://identifiers.org/chebi/CHEBI:36655) and 
Glyoxylate" (https://identifiers.org/chebi/CHEBI:36655)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations