wikipathways-collection

WikiPathways WP5155

• WikiPathways: WP5155 (classic)
• Species: Homo sapiens
• Scholia: WP5155

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 4
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • UnconnectedPoints: .x we found 1 problem(s):
    • Interactions with unconnected points: 4
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests
  • deletedPathways: .. all OK!
  • linksToDeletedPathways: .. all OK!
  • linksToDeletedPathways_All: .. all OK!
  • speciesMismatch: .. all OK!
  • testRoundedRectangle: .. all OK!
  • youMustCite: .. all OK!
  • oldLicenses: .. all OK!
  • mediawikiLinks: .. all OK!
  • allEmptyDescriptions: .. all OK!
  • allShortDescriptions: .x we found 1 problem(s):
    • Pathways of with a very short description: 1
  • multipleDescriptions: .. all OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• UnicodeTests: all 2 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 21
• Number of tests: 126
• Number of assertions: 253
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 4

• http://classic.wikipathways.org/instance/WP5155_r135483 http://rdf.wikipathways.org/Pathway/WP5155_r135483/DataNode/ecab1 (CYP)
• http://classic.wikipathways.org/instance/WP5155_r135483 http://rdf.wikipathways.org/Pathway/WP5155_r135483/DataNode/f3422 (CYP omega-hydrolase)
• http://classic.wikipathways.org/instance/WP5155_r135483 http://rdf.wikipathways.org/Pathway/WP5155_r135483/DataNode/a6e24 (LOX)
• http://classic.wikipathways.org/instance/WP5155_r135483 http://rdf.wikipathways.org/Pathway/WP5155_r135483/DataNode/ca8a9 (tetranor-TXB2)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Interactions with unconnected points

Interactions with unconnected points: 4

• http://classic.wikipathways.org/instance/WP5155_r135483

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/UnconnectedPoints

Pathway description is too short

Pathways of with a very short description: 1

• http://classic.wikipathways.org/instance/WP5155_r135483

More details at https://www.wikipathways.org/WikiPathwaysCurator/PathwayTests/allShortDescriptions