wikipathways-collection

WikiPathways WP5130

• WikiPathways: WP5130
• Scholia: WP5130

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 4 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 4 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 1
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 9
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 97
• Number of assertions: 196
• Number of fails: 2

Fails

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 1

http://classic.wikipathways.org/instance/WP5130_rr126092 "DNA" with graphId c02d1

InteractionTests.possibleTranslocations

Interactions between identical nodes: 9

http://classic.wikipathways.org/instance/WP5130_rr126092 http://rdf.wikipathways.org/Pathway/WP5130_rr126092/WP/Interaction/d07be "IL1BR" (https://identifiers.org/ensembl/ENSG00000125538) and 
IL1BR" (https://identifiers.org/ensembl/ENSG00000125538)
http://classic.wikipathways.org/instance/WP5130_rr126092 http://rdf.wikipathways.org/Pathway/WP5130_rr126092/WP/Interaction/d07be "IL1BR" (https://identifiers.org/ensembl/ENSG00000125538) and 
IL1B" (https://identifiers.org/ensembl/ENSG00000125538)
http://classic.wikipathways.org/instance/WP5130_rr126092 http://rdf.wikipathways.org/Pathway/WP5130_rr126092/WP/Interaction/d07be "IL1B" (https://identifiers.org/ensembl/ENSG00000125538) and 
IL1BR" (https://identifiers.org/ensembl/ENSG00000125538)
http://classic.wikipathways.org/instance/WP5130_rr126092 http://rdf.wikipathways.org/Pathway/WP5130_rr126092/WP/Interaction/d07be "IL1B" (https://identifiers.org/ensembl/ENSG00000125538) and 
IL1B" (https://identifiers.org/ensembl/ENSG00000125538)
http://classic.wikipathways.org/instance/WP5130_rr126092 http://rdf.wikipathways.org/Pathway/WP5130_rr126092/WP/Interaction/a32b5 "GATA3" (https://identifiers.org/ensembl/ENSG00000107485) and 
GATA3" (https://identifiers.org/ensembl/ENSG00000107485)
http://classic.wikipathways.org/instance/WP5130_rr126092 http://rdf.wikipathways.org/Pathway/WP5130_rr126092/WP/Interaction/be3f7 "T-bet" (https://identifiers.org/ensembl/ENSG00000073861) and 
T-bet" (https://identifiers.org/ensembl/ENSG00000073861)
http://classic.wikipathways.org/instance/WP5130_rr126092 http://rdf.wikipathways.org/Pathway/WP5130_rr126092/WP/Interaction/b1aa3 "HIF1A" (https://identifiers.org/ensembl/ENSG00000100644) and 
HIF1A" (https://identifiers.org/ensembl/ENSG00000100644)
http://classic.wikipathways.org/instance/WP5130_rr126092 http://rdf.wikipathways.org/Pathway/WP5130_rr126092/WP/Interaction/c4b06 "IRF4" (https://identifiers.org/ensembl/ENSG00000137265) and 
IRF4" (https://identifiers.org/ensembl/ENSG00000137265)
http://classic.wikipathways.org/instance/WP5130_rr126092 http://rdf.wikipathways.org/Pathway/WP5130_rr126092/WP/Interaction/dcaa8 "IL21" (https://identifiers.org/ensembl/ENSG00000138684) and 
IL21" (https://identifiers.org/ensembl/ENSG00000138684)

More details at https://wikipathways.github.io/WikiPathwaysCurator/InteractionTests/possibleTranslocations