wikipathways-collection
WikiPathways WP5120
- WikiPathways: WP5120 (classic)
- Species: Homo sapiens
- Scholia: WP5120
Tests
- CASMetabolitesTests: all 2 tests OK!
- ChEBIMetabolitesTests: all 5 tests OK!
- ChemSpiderTests: all 2 tests OK!
- DataNodesTests
- dataNodesWithoutIdentifier: .x we found 1 problem(s):
- unknownTypes_knownDatasource: .. all OK!
- unknownTypes: .x we found 1 problem(s):
- unknownTypes_Reactome: .. all OK!
- otherDataSource: .. all OK!
- EnsemblTests: all 4 tests OK!
- GeneTests: all 4 tests OK!
- GeneralTests: all 15 tests OK!
- HMDBSecMetabolitesTests: all 3 tests OK!
- InteractionTests
- noMetaboliteToNonMetaboliteConversions: .. all OK!
- noNonMetaboliteToMetaboliteConversions: .. all OK!
- noGeneProteinConversions: .. all OK!
- nonNumericIDs: .. all OK!
- interactionsWithLabels: .x we found 1 problem(s):
- possibleTranslocations: .. all OK!
- noProteinProteinConversions: .. all OK!
- incorrectKEGGIdentifiers: .. all OK!
- KEGGMetaboliteTests: all 2 tests OK!
- LIPIDMAPSTests: all 1 tests OK!
- MetaboliteStructureTests: all 1 tests OK!
- MetabolitesTests: all 14 tests OK!
- OudatedDataSourcesTests: all 24 tests OK!
- PathwayTests: all 7 tests OK!
- ProteinsTests: all 2 tests OK!
- PubChemMetabolitesTests: all 3 tests OK!
- ReferencesTests: all 6 tests OK!
- UniProtTests: all 5 tests OK!
- WikidataTests: all 4 tests OK!
Summary
- Number of test classes: 20
- Number of tests: 117
- Number of assertions: 235
- Number of fails: 3
Fails
Data nodes without an identifier
The following DataNodes have no identifier: 4
- http://classic.wikipathways.org/instance/WP5120_r125416 http://rdf.wikipathways.org/Pathway/WP5120_r125416/DataNode/af9d2 (Congophilic inclusions)
- http://classic.wikipathways.org/instance/WP5120_r125416 http://rdf.wikipathways.org/Pathway/WP5120_r125416/DataNode/c6fee (Non-congophilic diffuse inclusions)
- http://classic.wikipathways.org/instance/WP5120_r125416 http://rdf.wikipathways.org/Pathway/WP5120_r125416/DataNode/a78e9 (Paired helical filaments)
- http://classic.wikipathways.org/instance/WP5120_r125416 http://rdf.wikipathways.org/Pathway/WP5120_r125416/DataNode/f3b21 (Y-sectretase complex)
More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier
Datanodes of unknown type
The following DataNodes have Unknown @Type: 10
- http://classic.wikipathways.org/instance/WP5120_r125416 http://rdf.wikipathways.org/Pathway/WP5120_r125416/DataNode/d5278 (Aging)
- http://classic.wikipathways.org/instance/WP5120_r125416 http://rdf.wikipathways.org/Pathway/WP5120_r125416/DataNode/de5e2 (Autoimmunity)
- http://classic.wikipathways.org/instance/WP5120_r125416 http://rdf.wikipathways.org/Pathway/WP5120_r125416/DataNode/ba747 (Autophagosome)
- http://classic.wikipathways.org/instance/WP5120_r125416 http://rdf.wikipathways.org/Pathway/WP5120_r125416/DataNode/af9d2 (Congophilic inclusions)
- http://classic.wikipathways.org/instance/WP5120_r125416 http://rdf.wikipathways.org/Pathway/WP5120_r125416/DataNode/daebe (Environmental factor)
- http://classic.wikipathways.org/instance/WP5120_r125416 http://rdf.wikipathways.org/Pathway/WP5120_r125416/DataNode/c48ad (Neuromuscular junction)
- http://classic.wikipathways.org/instance/WP5120_r125416 http://rdf.wikipathways.org/Pathway/WP5120_r125416/DataNode/c6fee (Non-congophilic diffuse inclusions)
- http://classic.wikipathways.org/instance/WP5120_r125416 http://rdf.wikipathways.org/Pathway/WP5120_r125416/DataNode/a78e9 (Paired helical filaments)
- http://classic.wikipathways.org/instance/WP5120_r125416 http://rdf.wikipathways.org/Pathway/WP5120_r125416/DataNode/a5722 (Risk gene)
- http://classic.wikipathways.org/instance/WP5120_r125416 http://rdf.wikipathways.org/Pathway/WP5120_r125416/DataNode/ed1d3 (Signal transduction)
More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/unknownTypes
InteractionTests.interactionsWithLabels
Interactions found that involve Labels: 1
http://classic.wikipathways.org/instance/WP5120_r125416 "Misfolded
proteins" with graphId cdc61