wikipathways-collection

WikiPathways WP5118

• WikiPathways: WP5118 (classic)
• Species: Homo sapiens
• Scholia: WP5118

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 4
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 1

Fails

Possible MIM translocation

Interactions between identical nodes: 4

http://classic.wikipathways.org/instance/WP5118_r129308 http://rdf.wikipathways.org/Pathway/WP5118_r129308/WP/Interaction/afa38 "SMC1A" (https://identifiers.org/ensembl/ENSG00000072501) and 
SMC1A" (https://identifiers.org/ensembl/ENSG00000072501)
http://classic.wikipathways.org/instance/WP5118_r129308 http://rdf.wikipathways.org/Pathway/WP5118_r129308/WP/Interaction/a8135 "BRCA1" (https://identifiers.org/ensembl/ENSG00000012048) and 
BRCA1" (https://identifiers.org/ensembl/ENSG00000012048)
http://classic.wikipathways.org/instance/WP5118_r129308 http://rdf.wikipathways.org/Pathway/WP5118_r129308/WP/Interaction/d9c85 "SMC1A" (https://identifiers.org/ensembl/ENSG00000072501) and 
SMC1A" (https://identifiers.org/ensembl/ENSG00000072501)
http://classic.wikipathways.org/instance/WP5118_r129308 http://rdf.wikipathways.org/Pathway/WP5118_r129308/WP/Interaction/f58e4 "NBN" (https://identifiers.org/ensembl/ENSG00000104320) and 
NBN" (https://identifiers.org/ensembl/ENSG00000104320)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations