wikipathways-collection

WikiPathways WP5115

• WikiPathways: WP5115 (classic)
• Species: Homo sapiens
• Scholia: WP5115

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 37
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests
  • curationAndHypothetical: .. all OK!
  • curationAndNeedsWork: .. all OK!
  • curationAndReactome: .. all OK!
  • dataNodeWithoutGraphId: .. all OK!
  • duplicateTitles: .. all OK!
  • emptyDataSources: x we found 1 problem(s):
    • Data nodes with a ‘’ data source: 3
  • emptyLabelOfNodeWithIdentifier: .. all OK!
  • groupsHaveDetail: .. all OK!
  • noTags: .. all OK!
  • nullDataSources: .. all OK!
  • stockComments: .. all OK!
  • titlesShortEnough: .. all OK!
  • undefinedDataSources: .. all OK!
  • undefinedIdentifier: .. all OK!
  • weirdCharacterTitles: .. all OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 1
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 37

• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/acefa (ADAM9)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/be114 (ATE1)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/e990f (ATP13A3)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/b0c92 (ATP6AP1 )
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/f57f0 (CLCC1)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/b5621 (COQ8B)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/da617 (ERLEC1)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/f9186 (FAM98A)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/a74b7 (G3BP1)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/cb934 (G3BP2)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/a8469 (GGH)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/de51d (GTF2F2)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/f7394 (INTS4)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/d900b (LARP1)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/c2d67 (MDN1)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/b513f (MIB1)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/f3c86 (MOV10)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/cc05e (NEK9)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/a6f15 (NPTX1)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/d579d (PITRM1)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/e61f0 (PMPCB)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/de69d (RAP1GDS1)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/cedb7 (RTN4)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/fa31b (SDF2)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/a48f9 (SIGMAR1)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/a0f6a (SRP19)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/ed83b (SRP54)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/feead (SRP72)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/b29f5 (TLE1)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/d0ce5 (TLE3)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/e6d58 (TLE5)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/fdf13 (TLRs)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/f96dc (TOMM70)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/c63fe (TRIM59)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/f95d4 (UGGT2)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/a16f0 (UPF1)
• http://classic.wikipathways.org/instance/WP5115_r134648 http://rdf.wikipathways.org/Pathway/WP5115_r134648/DataNode/575593575 (VEGFA)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Data nodes with an identifier but an empty data source

Data nodes with a ‘’ data source: 3

• http://www.wikipathways.org/instance/WP5115_r134648 MARK2 (MARK2)
• http://www.wikipathways.org/instance/WP5115_r134648 OS9 (OS9)
• http://www.wikipathways.org/instance/WP5115_r134648 TBKBP1 (TBKBP1)

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 1

http://classic.wikipathways.org/instance/WP5115_r134648 "Apoptosis" with graphId d7fd1