wikipathways-collection

WikiPathways WP5115

• WikiPathways: WP5115 (classic)
• Species: Homo sapiens
• Scholia: WP5115

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 40
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 1
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 40

http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/acefa (ADAM9)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/be114 (ATE1)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/e990f (ATP13A3)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/b0c92 (ATP6AP1 )
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/f57f0 (CLCC1)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/b5621 (COQ8B)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/da617 (ERLEC1)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/f9186 (FAM98A)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/a74b7 (G3BP1)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/cb934 (G3BP2)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/a8469 (GGH)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/de51d (GTF2F2)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/f7394 (INTS4)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/d900b (LARP1)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/ff0b0 (MARK2)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/c2d67 (MDN1)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/b513f (MIB1)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/f3c86 (MOV10)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/cc05e (NEK9)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/a6f15 (NPTX1)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/ed8a5 (OS9)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/d579d (PITRM1)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/e61f0 (PMPCB)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/de69d (RAP1GDS1)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/cedb7 (RTN4)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/fa31b (SDF2)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/a48f9 (SIGMAR1)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/a0f6a (SRP19)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/ed83b (SRP54)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/feead (SRP72)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/f1346 (TBKBP1)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/b29f5 (TLE1)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/d0ce5 (TLE3)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/e6d58 (TLE5)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/fdf13 (TLRs)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/f96dc (TOMM70)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/c63fe (TRIM59)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/f95d4 (UGGT2)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/a16f0 (UPF1)
http://classic.wikipathways.org/instance/WP5115_r126845 http://rdf.wikipathways.org/Pathway/WP5115_r126845/DataNode/346861221 (VEGFA)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 1

http://classic.wikipathways.org/instance/WP5115_r126845 "Apoptosis" with graphId d7fd1