WikiPathways WP5114
- WikiPathways: WP5114 (classic)
- Species: Homo sapiens
- Scholia: WP5114
Tests
- CASMetabolitesTests: all 2 tests OK!
- ChEBIMetabolitesTests: all 5 tests OK!
- ChemSpiderTests: all 2 tests OK!
- DataNodesTests
- dataNodesWithoutIdentifier: .x we found 1 problem(s):
- unknownTypes_knownDatasource: .. all OK!
- unknownTypes: .. all OK!
- unknownTypes_Reactome: .. all OK!
- otherDataSource: .. all OK!
- EnsemblTests: all 4 tests OK!
- GeneTests: all 4 tests OK!
- GeneralTests: all 13 tests OK!
- HMDBSecMetabolitesTests: all 3 tests OK!
- InteractionTests
- noMetaboliteToNonMetaboliteConversions: .. all OK!
- noNonMetaboliteToMetaboliteConversions: .. all OK!
- noGeneProteinConversions: .x we found 1 problem(s):
- nonNumericIDs: .. all OK!
- interactionsWithLabels: .x we found 1 problem(s):
- possibleTranslocations: .. all OK!
- noProteinProteinConversions: .. all OK!
- incorrectKEGGIdentifiers: .. all OK!
- KEGGMetaboliteTests: all 2 tests OK!
- LIPIDMAPSTests: all 1 tests OK!
- MetaboliteStructureTests: all 1 tests OK!
- MetabolitesTests: all 14 tests OK!
- OudatedDataSourcesTests: all 8 tests OK!
- PathwayTests: all 7 tests OK!
- ProteinsTests: all 2 tests OK!
- PubChemMetabolitesTests: all 3 tests OK!
- ReferencesTests: all 6 tests OK!
- UniProtTests: all 5 tests OK!
- WikidataTests: all 4 tests OK!
Summary
- Number of test classes: 20
- Number of tests: 99
- Number of assertions: 200
- Number of fails: 3
Fails
Data nodes without an identifier
The following DataNodes have no identifier: 2
http://classic.wikipathways.org/instance/WP5114_r119169 http://rdf.wikipathways.org/Pathway/WP5114_r119169/DataNode/b4fc3 (RNA polymerase II)
http://classic.wikipathways.org/instance/WP5114_r119169 http://rdf.wikipathways.org/Pathway/WP5114_r119169/DataNode/bde01 (TFIIS)
More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier
Possibly wrong MIM type for Gene-Protein conversions
Unexpected gene-protein conversions: 1
Homo sapiens http://classic.wikipathways.org/instance/WP5114_r119169 -> https://identifiers.org/uniprot/A0A024R017 https://identifiers.org/hgnc.symbol/PARP1 http://rdf.wikipathways.org/Pathway/WP5114_r119169/WP/Interaction/idf61f66fe Did you mean wp:TranscriptionTranslation?
More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/noGeneProteinConversions
InteractionTests.interactionsWithLabels
Interactions found that involve Labels: 1
http://classic.wikipathways.org/instance/WP5114_r119169 "DNA damage signaling" with graphId b135e