wikipathways-collection

WikiPathways WP5104

• WikiPathways: WP5104
• Scholia: WP5104

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 4 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .. all OK!
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 3
  • unknownTypes_Reactome: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 3 tests OK!
• GeneralTests
  • curationAndHypothetical: .. all OK!
  • curationAndNeedsWork: .. all OK!
  • curationAndReactome: .. all OK!
  • dataNodeWithoutGraphId: .. all OK!
  • duplicateTitles: .. all OK!
  • emptyLabelOfNodeWithIdentifier: .. all OK!
  • groupsHaveDetail: .. all OK!
  • noTags: .. all OK!
  • nullDataSources: .. all OK!
  • titlesShortEnough: .. all OK!
  • undefinedDataSources: .. all OK!
  • undefinedIdentifier: .. all OK!
  • weirdCharacterTitles: .x we found 1 problem(s):
    • Titles with unexpected characters (only allow alphanumerics and spaces):1
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 5
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 18
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 6 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 4 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 93
• Number of assertions: 186
• Number of fails: 4

Fails

DataNodesTests.unknownTypes

The following DataNodes have Unknown @Type: 3

http://www.wikipathways.org/instance/WP5104_rr120389 http://rdf.wikipathways.org/Pathway/WP5104_rr120389/DataNode/cdde8 (Autoimmune disease)
http://www.wikipathways.org/instance/WP5104_rr120389 http://rdf.wikipathways.org/Pathway/WP5104_rr120389/DataNode/ed628 (Barraquer-Simons syndrome)
http://www.wikipathways.org/instance/WP5104_rr120389 http://rdf.wikipathways.org/Pathway/WP5104_rr120389/DataNode/c7ca1 (Membranoproliferative 
glomerulonephritis)

GeneralTests.weirdCharacterTitles

Titles with unexpected characters (only allow alphanumerics and spaces):1

http://www.wikipathways.org/instance/WP5104_rr120389 'Acquired partial lipodystrophy / Barraquer-Simons syndrome' has 1 weird characters

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 5

http://www.wikipathways.org/instance/WP5104_rr120389 "Excess amount of 
membrane attack complex" with graphId f07fd
http://www.wikipathways.org/instance/WP5104_rr120389 "Adipocyte lysis" with graphId c2596
http://www.wikipathways.org/instance/WP5104_rr120389 "Nuclear Lamina" with graphId f56d5
http://www.wikipathways.org/instance/WP5104_rr120389 "Hydrolysis" with graphId ef858
http://www.wikipathways.org/instance/WP5104_rr120389 "DNA replication
RNA transcription
Cell cycle regulation
Mehcanical support
etc." with graphId e99b5

InteractionTests.possibleTranslocations

Interactions between identical nodes: 18

http://www.wikipathways.org/instance/WP5104_rr120389 http://rdf.wikipathways.org/Pathway/WP5104_rr120389/WP/Interaction/id33f792da "C3a" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3a" (https://identifiers.org/ensembl/ENSG00000125730)
http://www.wikipathways.org/instance/WP5104_rr120389 http://rdf.wikipathways.org/Pathway/WP5104_rr120389/WP/Interaction/id33f792da "C3a" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3b" (https://identifiers.org/ensembl/ENSG00000125730)
http://www.wikipathways.org/instance/WP5104_rr120389 http://rdf.wikipathways.org/Pathway/WP5104_rr120389/WP/Interaction/id33f792da "C3a" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3" (https://identifiers.org/ensembl/ENSG00000125730)
http://www.wikipathways.org/instance/WP5104_rr120389 http://rdf.wikipathways.org/Pathway/WP5104_rr120389/WP/Interaction/id33f792da "C3b" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3a" (https://identifiers.org/ensembl/ENSG00000125730)
http://www.wikipathways.org/instance/WP5104_rr120389 http://rdf.wikipathways.org/Pathway/WP5104_rr120389/WP/Interaction/id33f792da "C3b" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3b" (https://identifiers.org/ensembl/ENSG00000125730)
http://www.wikipathways.org/instance/WP5104_rr120389 http://rdf.wikipathways.org/Pathway/WP5104_rr120389/WP/Interaction/id33f792da "C3b" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3" (https://identifiers.org/ensembl/ENSG00000125730)
http://www.wikipathways.org/instance/WP5104_rr120389 http://rdf.wikipathways.org/Pathway/WP5104_rr120389/WP/Interaction/id33f792da "C3" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3a" (https://identifiers.org/ensembl/ENSG00000125730)
http://www.wikipathways.org/instance/WP5104_rr120389 http://rdf.wikipathways.org/Pathway/WP5104_rr120389/WP/Interaction/id33f792da "C3" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3b" (https://identifiers.org/ensembl/ENSG00000125730)
http://www.wikipathways.org/instance/WP5104_rr120389 http://rdf.wikipathways.org/Pathway/WP5104_rr120389/WP/Interaction/id33f792da "C3" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3" (https://identifiers.org/ensembl/ENSG00000125730)
http://www.wikipathways.org/instance/WP5104_rr120389 http://rdf.wikipathways.org/Pathway/WP5104_rr120389/WP/Interaction/c9f4a "C3a" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3a" (https://identifiers.org/ensembl/ENSG00000125730)
http://www.wikipathways.org/instance/WP5104_rr120389 http://rdf.wikipathways.org/Pathway/WP5104_rr120389/WP/Interaction/c9f4a "C3a" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3b" (https://identifiers.org/ensembl/ENSG00000125730)
http://www.wikipathways.org/instance/WP5104_rr120389 http://rdf.wikipathways.org/Pathway/WP5104_rr120389/WP/Interaction/c9f4a "C3a" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3" (https://identifiers.org/ensembl/ENSG00000125730)
http://www.wikipathways.org/instance/WP5104_rr120389 http://rdf.wikipathways.org/Pathway/WP5104_rr120389/WP/Interaction/c9f4a "C3b" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3a" (https://identifiers.org/ensembl/ENSG00000125730)
http://www.wikipathways.org/instance/WP5104_rr120389 http://rdf.wikipathways.org/Pathway/WP5104_rr120389/WP/Interaction/c9f4a "C3b" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3b" (https://identifiers.org/ensembl/ENSG00000125730)
http://www.wikipathways.org/instance/WP5104_rr120389 http://rdf.wikipathways.org/Pathway/WP5104_rr120389/WP/Interaction/c9f4a "C3b" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3" (https://identifiers.org/ensembl/ENSG00000125730)
http://www.wikipathways.org/instance/WP5104_rr120389 http://rdf.wikipathways.org/Pathway/WP5104_rr120389/WP/Interaction/c9f4a "C3" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3a" (https://identifiers.org/ensembl/ENSG00000125730)
http://www.wikipathways.org/instance/WP5104_rr120389 http://rdf.wikipathways.org/Pathway/WP5104_rr120389/WP/Interaction/c9f4a "C3" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3b" (https://identifiers.org/ensembl/ENSG00000125730)
http://www.wikipathways.org/instance/WP5104_rr120389 http://rdf.wikipathways.org/Pathway/WP5104_rr120389/WP/Interaction/c9f4a "C3" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3" (https://identifiers.org/ensembl/ENSG00000125730)

More details at https://wikipathways.github.io/WikiPathwaysCurator/InteractionTests/possibleTranslocations