wikipathways-collection

WikiPathways WP5103

• WikiPathways: WP5103
• Scholia: WP5103

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 4 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .. all OK!
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 8
  • unknownTypes_Reactome: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 3 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 2
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 6 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 4 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 93
• Number of assertions: 186
• Number of fails: 2

Fails

DataNodesTests.unknownTypes

The following DataNodes have Unknown @Type: 8

http://www.wikipathways.org/instance/WP5103_rr119170 http://rdf.wikipathways.org/Pathway/WP5103_rr119170/DataNode/d6538 (Hutchinson-Gilford 
Progeria Syndrome)
http://www.wikipathways.org/instance/WP5103_rr119170 http://rdf.wikipathways.org/Pathway/WP5103_rr119170/DataNode/e440d (Keppen-Lubinsky
syndrome)
http://www.wikipathways.org/instance/WP5103_rr119170 http://rdf.wikipathways.org/Pathway/WP5103_rr119170/DataNode/efb22 (MDP 
syndrome)
http://www.wikipathways.org/instance/WP5103_rr119170 http://rdf.wikipathways.org/Pathway/WP5103_rr119170/DataNode/f4495 (Mandibuloacral
dysplasia)
http://www.wikipathways.org/instance/WP5103_rr119170 http://rdf.wikipathways.org/Pathway/WP5103_rr119170/DataNode/f626b (Marfan 
syndrome)
http://www.wikipathways.org/instance/WP5103_rr119170 http://rdf.wikipathways.org/Pathway/WP5103_rr119170/DataNode/e12e0 (Nestor-Guillermo 
progeria syndrome)
http://www.wikipathways.org/instance/WP5103_rr119170 http://rdf.wikipathways.org/Pathway/WP5103_rr119170/DataNode/d7ddc (Progeroid features-hepatocellular 
carcinoma predisposition syndrome )
http://www.wikipathways.org/instance/WP5103_rr119170 http://rdf.wikipathways.org/Pathway/WP5103_rr119170/DataNode/eb3f8 (Werner 
syndrome)

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 2

http://www.wikipathways.org/instance/WP5103_rr119170 "K+ influx" with graphId ac0c0
http://www.wikipathways.org/instance/WP5103_rr119170 "Progeria Associated Lipodystrophy" with graphId e8fb3