wikipathways-collection

WikiPathways WP5101

• WikiPathways: WP5101 (classic)
• Species: Homo sapiens
• Scholia: WP5101

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .. all OK!
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 5
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 5
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 8 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 120
• Number of assertions: 241
• Number of fails: 2

Fails

Datanodes of unknown type

The following DataNodes have Unknown @Type: 5

• http://classic.wikipathways.org/instance/WP5101_r123625 http://rdf.wikipathways.org/Pathway/WP5101_r123625/DataNode/b2b19 (CGL type 1)
• http://classic.wikipathways.org/instance/WP5101_r123625 http://rdf.wikipathways.org/Pathway/WP5101_r123625/DataNode/dc457 (CGL type 2)
• http://classic.wikipathways.org/instance/WP5101_r123625 http://rdf.wikipathways.org/Pathway/WP5101_r123625/DataNode/f1653 (CGL type 3)
• http://classic.wikipathways.org/instance/WP5101_r123625 http://rdf.wikipathways.org/Pathway/WP5101_r123625/DataNode/d0875 (CGL type 4)
• http://classic.wikipathways.org/instance/WP5101_r123625 http://rdf.wikipathways.org/Pathway/WP5101_r123625/DataNode/fa32e (Congenital Generalized Lipodystrophy (CGL))

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/unknownTypes

Interactions with Labels

Interactions found that involve Labels: 5

• http://classic.wikipathways.org/instance/WP5101_r123625 “Loss of lipid droplet formation” with graphId bcf55
• http://classic.wikipathways.org/instance/WP5101_r123625 “Loss of metabolically active adipose tissue” with graphId e271a
• http://classic.wikipathways.org/instance/WP5101_r123625 “Translocates FA to lipid droplets” with graphId df665
• http://classic.wikipathways.org/instance/WP5101_r123625 “Adipogenesis” with graphId aa8b2
• http://classic.wikipathways.org/instance/WP5101_r123625 “Cell cycle progression” with graphId db195

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels