wikipathways-collection

WikiPathways WP5097

• WikiPathways: WP5097 (classic)
• Species: Homo sapiens
• Scholia: WP5097

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 15
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 61
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 15

http://classic.wikipathways.org/instance/WP5097_r126447 http://rdf.wikipathways.org/Pathway/WP5097_r126447/DataNode/f2709 (ATP6VOE2-AS1)
http://classic.wikipathways.org/instance/WP5097_r126447 http://rdf.wikipathways.org/Pathway/WP5097_r126447/DataNode/c0cd0 (hsa-miR-199a-5p)
http://classic.wikipathways.org/instance/WP5097_r126447 http://rdf.wikipathways.org/Pathway/WP5097_r126447/DataNode/de5f3 (lnc-DENND3-2)
http://classic.wikipathways.org/instance/WP5097_r126447 http://rdf.wikipathways.org/Pathway/WP5097_r126447/DataNode/e81f2 (lnc-ESRRB-1)
http://classic.wikipathways.org/instance/WP5097_r126447 http://rdf.wikipathways.org/Pathway/WP5097_r126447/DataNode/ba796 (lnc-FANCM-1)
http://classic.wikipathways.org/instance/WP5097_r126447 http://rdf.wikipathways.org/Pathway/WP5097_r126447/DataNode/d5eef (lnc-GOLGA8Q-1)
http://classic.wikipathways.org/instance/WP5097_r126447 http://rdf.wikipathways.org/Pathway/WP5097_r126447/DataNode/fcd36 (lnc-PMAIP1-9)
http://classic.wikipathways.org/instance/WP5097_r126447 http://rdf.wikipathways.org/Pathway/WP5097_r126447/DataNode/ae947 (lnc-PYGL-1)
http://classic.wikipathways.org/instance/WP5097_r126447 http://rdf.wikipathways.org/Pathway/WP5097_r126447/DataNode/e7894 (lnc-RGMA-3)
http://classic.wikipathways.org/instance/WP5097_r126447 http://rdf.wikipathways.org/Pathway/WP5097_r126447/DataNode/c9a30 (lnc-SCN8A-1)
http://classic.wikipathways.org/instance/WP5097_r126447 http://rdf.wikipathways.org/Pathway/WP5097_r126447/DataNode/f44d1 (lnc-SLC16A3-3)
http://classic.wikipathways.org/instance/WP5097_r126447 http://rdf.wikipathways.org/Pathway/WP5097_r126447/DataNode/a342f (lnc-SSU72P8-2)
http://classic.wikipathways.org/instance/WP5097_r126447 http://rdf.wikipathways.org/Pathway/WP5097_r126447/DataNode/f934e (lnc-U2AF2-2)
http://classic.wikipathways.org/instance/WP5097_r126447 http://rdf.wikipathways.org/Pathway/WP5097_r126447/DataNode/bcac7 (lnc-ZBTB20-1)
http://classic.wikipathways.org/instance/WP5097_r126447 http://rdf.wikipathways.org/Pathway/WP5097_r126447/DataNode/bf253 (lnc-ZFP37-1)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 61

http://classic.wikipathways.org/instance/WP5097_r126447 "EMT and invasion
of MDA-MB-231
and MCF-7 cells" with graphId e5688
http://classic.wikipathways.org/instance/WP5097_r126447 "Collagen
production
in pulmonary
fibroblasts" with graphId d4114
http://classic.wikipathways.org/instance/WP5097_r126447 "Tumor-associated
macrophage-induced
metastasis of
MDA-MB-231 cells" with graphId dc0a2
http://classic.wikipathways.org/instance/WP5097_r126447 "Induction of
EMT and stemness
in Tu686 and
FaDu cells" with graphId d4862
http://classic.wikipathways.org/instance/WP5097_r126447 "Migration and invasion of
PANC-1 and Capan-2 cells
Maintenance of the 
Warburg effect" with graphId fc474
http://classic.wikipathways.org/instance/WP5097_r126447 "CY" with graphId a1a09
http://classic.wikipathways.org/instance/WP5097_r126447 "NU" with graphId f53d1
http://classic.wikipathways.org/instance/WP5097_r126447 "Production of
Collagen in
fibroblasts" with graphId ad448
http://classic.wikipathways.org/instance/WP5097_r126447 "Proliferation, and
metastasis of HSC6
oral carcinoma cells" with graphId b8b5a
http://classic.wikipathways.org/instance/WP5097_r126447 "CY" with graphId f7176
http://classic.wikipathways.org/instance/WP5097_r126447 "PM" with graphId c4d03
http://classic.wikipathways.org/instance/WP5097_r126447 "PM" with graphId fb8d2
http://classic.wikipathways.org/instance/WP5097_r126447 "CY" with graphId ad894
http://classic.wikipathways.org/instance/WP5097_r126447 "Invasion and migration
of MGC-803, GES-1 and
MKN28 cells" with graphId f0a72
http://classic.wikipathways.org/instance/WP5097_r126447 "Invasion in 
HEEC,ECA109,
KYSE30, KYSE140
KYSE510, and
TE-1 cells" with graphId a9cde
http://classic.wikipathways.org/instance/WP5097_r126447 "Myofibroblast
differentiation of
breast phyllodes
tumors" with graphId ef9fd
http://classic.wikipathways.org/instance/WP5097_r126447 "Adhesion and
F-actin
polymerization" with graphId a72f0
http://classic.wikipathways.org/instance/WP5097_r126447 "Migration of
MDA-MB-231 and
SKBR3 cells
" with graphId aff36
http://classic.wikipathways.org/instance/WP5097_r126447 "Proliferation,
migration, invasion and
EMT in HSC6 and CAL27 cells" with graphId acdf0
http://classic.wikipathways.org/instance/WP5097_r126447 "ARF6 rich
membrane
protrusions" with graphId b63ac
http://classic.wikipathways.org/instance/WP5097_r126447 "Migration and
tube formation
in HUVECs" with graphId f546b
http://classic.wikipathways.org/instance/WP5097_r126447 "Metastasis and
EMT in Tu686,
6-10B and
FaDu cells" with graphId a964d
http://classic.wikipathways.org/instance/WP5097_r126447 "CY" with graphId d910d
http://classic.wikipathways.org/instance/WP5097_r126447 "PM" with graphId db2f2
http://classic.wikipathways.org/instance/WP5097_r126447 "Cytoskeleton
reorganization
in MDA-MB-231
cells" with graphId b8efe
http://classic.wikipathways.org/instance/WP5097_r126447 "Migration and 
invasion of 
BxPC-3 and 
PANC-1 cells" with graphId fb72c
http://classic.wikipathways.org/instance/WP5097_r126447 "Gi-alpha
dependent" with graphId f3dd1
http://classic.wikipathways.org/instance/WP5097_r126447 "In OS-RC-2
and ACHN
cells" with graphId be0dd
http://classic.wikipathways.org/instance/WP5097_r126447 "Polymerization
of F-actin and
Cytoskeleton
reorganization
in  A549 and 
H1299 cells" with graphId af3f5
http://classic.wikipathways.org/instance/WP5097_r126447 "Enhances
ECM adherence
of MDA-MB-231
cells" with graphId aa3d8
http://classic.wikipathways.org/instance/WP5097_r126447 "EMT in Tu686,
6-10B and 
FaDu cells" with graphId ff346
http://classic.wikipathways.org/instance/WP5097_r126447 "Directional
migration of
MDA-MB-231
cells" with graphId ff331
http://classic.wikipathways.org/instance/WP5097_r126447 "Proliferation and 
differentiation 
in Tu686, 6-10B
and FaDu cells" with graphId c3e31
http://classic.wikipathways.org/instance/WP5097_r126447 "CY" with graphId b57d0
http://classic.wikipathways.org/instance/WP5097_r126447 "NU" with graphId bafb8
http://classic.wikipathways.org/instance/WP5097_r126447 "EMT in
MDA-MB-231
and MCF-7
cells" with graphId c0b24
http://classic.wikipathways.org/instance/WP5097_r126447 "F-actin
polymerization
in Th2 cells" with graphId a0c87
http://classic.wikipathways.org/instance/WP5097_r126447 "Switching of
CD4+CD45RO+CD25-
T cells into
CD4+CD25+Foxp3+
regulatory
T cells" with graphId f1468
http://classic.wikipathways.org/instance/WP5097_r126447 "Migration and
invasion of
5637 bladder
cancer cells" with graphId f8ea5
http://classic.wikipathways.org/instance/WP5097_r126447 "PM" with graphId dae3a
http://classic.wikipathways.org/instance/WP5097_r126447 "CY" with graphId f2fea
http://classic.wikipathways.org/instance/WP5097_r126447 "CY" with graphId fe8ba
http://classic.wikipathways.org/instance/WP5097_r126447 "PM" with graphId cc875
http://classic.wikipathways.org/instance/WP5097_r126447 "Lactate
production
in PC3 cells" with graphId fb60c
http://classic.wikipathways.org/instance/WP5097_r126447 "Induces
stem cell-like
characteristics
in HSC6, 
CAL33 and
SCC15 cells" with graphId d6a0b
http://classic.wikipathways.org/instance/WP5097_r126447 "Proliferation 
and migration
of MG63 and 143B
osteosarcoma cells" with graphId d8633
http://classic.wikipathways.org/instance/WP5097_r126447 "EMT in
Ishikawa
cells" with graphId d7bf6
http://classic.wikipathways.org/instance/WP5097_r126447 " Abrogates
 chemotactic
 responses 
 induced by
 their ligands" with graphId d5da1
http://classic.wikipathways.org/instance/WP5097_r126447 "Adhesion, migration
and invasion of 
MCF-7 cells" with graphId c9441
http://classic.wikipathways.org/instance/WP5097_r126447 "EMT in HSC6
and CAL33 cells" with graphId ae0e6
http://classic.wikipathways.org/instance/WP5097_r126447 "Proliferation
of HSC6 and
CAL27 cells" with graphId ef75c
http://classic.wikipathways.org/instance/WP5097_r126447 "Proliferation,
invasion and
iigration of
Skov3 cells" with graphId e3fd4
http://classic.wikipathways.org/instance/WP5097_r126447 "CY" with graphId c5032
http://classic.wikipathways.org/instance/WP5097_r126447 "PM" with graphId d27c2
http://classic.wikipathways.org/instance/WP5097_r126447 "Endothelial-Mesenchymal
Transformation (EndMT)
in HUVECs" with graphId c52fb
http://classic.wikipathways.org/instance/WP5097_r126447 "Invasion and
migration of
A549 and 
H1299 cells" with graphId b68db
http://classic.wikipathways.org/instance/WP5097_r126447 "Hematopoiesis
in myeloid
long-term
bone marrow
cultures" with graphId fad9b
http://classic.wikipathways.org/instance/WP5097_r126447 "Migration
and invasion
of MDA-MB-231
cells" with graphId e07a3
http://classic.wikipathways.org/instance/WP5097_r126447 "Migration & invasion
of SMMC-7721 cells" with graphId b38eb
http://classic.wikipathways.org/instance/WP5097_r126447 "Motility of
MDA-MB-231
cells" with graphId e5e31
http://classic.wikipathways.org/instance/WP5097_r126447 "Migration of
CaOV3 and
OVCAR3 cells" with graphId df17f