wikipathways-collection
WikiPathways WP5094
- WikiPathways: WP5094 (classic)
- Species: Homo sapiens
- Scholia: WP5094
Tests
- CASMetabolitesTests: all 2 tests OK!
- ChEBIMetabolitesTests: all 5 tests OK!
- ChemSpiderTests: all 2 tests OK!
- DataNodesTests
- dataNodesWithoutIdentifier: .x we found 1 problem(s):
- unknownTypes_knownDatasource: .. all OK!
- unknownTypes: .. all OK!
- unknownTypes_Reactome: .. all OK!
- otherDataSource: .. all OK!
- EnsemblTests: all 4 tests OK!
- GeneTests: all 4 tests OK!
- GeneralTests: all 13 tests OK!
- HMDBSecMetabolitesTests: all 3 tests OK!
- InteractionTests
- noMetaboliteToNonMetaboliteConversions: .. all OK!
- noNonMetaboliteToMetaboliteConversions: .. all OK!
- noGeneProteinConversions: .. all OK!
- nonNumericIDs: .. all OK!
- interactionsWithLabels: .x we found 1 problem(s):
- possibleTranslocations: .x we found 1 problem(s):
- noProteinProteinConversions: .. all OK!
- incorrectKEGGIdentifiers: .. all OK!
- KEGGMetaboliteTests: all 2 tests OK!
- LIPIDMAPSTests: all 1 tests OK!
- MetaboliteStructureTests: all 1 tests OK!
- MetabolitesTests: all 14 tests OK!
- OudatedDataSourcesTests: all 8 tests OK!
- PathwayTests: all 7 tests OK!
- ProteinsTests: all 2 tests OK!
- PubChemMetabolitesTests: all 3 tests OK!
- ReferencesTests: all 6 tests OK!
- UniProtTests: all 5 tests OK!
- WikidataTests: all 4 tests OK!
Summary
- Number of test classes: 20
- Number of tests: 99
- Number of assertions: 200
- Number of fails: 3
Fails
Data nodes without an identifier
The following DataNodes have no identifier: 2
http://classic.wikipathways.org/instance/WP5094_r126204 http://rdf.wikipathways.org/Pathway/WP5094_r126204/DataNode/be77e (Glucose
metabolism)
http://classic.wikipathways.org/instance/WP5094_r126204 http://rdf.wikipathways.org/Pathway/WP5094_r126204/DataNode/b3c43 (IP1)
More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier
InteractionTests.interactionsWithLabels
Interactions found that involve Labels: 27
http://classic.wikipathways.org/instance/WP5094_r126204 "In anoxia /
hypoglycemic
astrocytes" with graphId bd78b
http://classic.wikipathways.org/instance/WP5094_r126204 "Regulation of
expression of
HCRTR1/2 in
leuteal cells" with graphId ed19b
http://classic.wikipathways.org/instance/WP5094_r126204 "Orexin A" with graphId c303e
http://classic.wikipathways.org/instance/WP5094_r126204 "In cortical
neurons" with graphId dd1ff
http://classic.wikipathways.org/instance/WP5094_r126204 "Cell death
in HCRTR1-
transfected
CHO-K1 cells
" with graphId eb13a
http://classic.wikipathways.org/instance/WP5094_r126204 "Anti-inflammatory
response of orexin
in Intracerebral
hemorrhage" with graphId f7a0a
http://classic.wikipathways.org/instance/WP5094_r126204 "SRC
family" with graphId fc1c7
http://classic.wikipathways.org/instance/WP5094_r126204 " Sustained
HCRTR1-ARRB2
interaction
prolonged
MAPK1/3
activation
in HEK-293T
HCRTR1+ cells" with graphId d3ae3
http://classic.wikipathways.org/instance/WP5094_r126204 " Apoptosis in
OX1R+ HT29-D4,
SK-N-MC, C6 &
CHO cell lines" with graphId e6121
http://classic.wikipathways.org/instance/WP5094_r126204 "In pre- and
differentiated
3T3-L1 adipocytes" with graphId e4818
http://classic.wikipathways.org/instance/WP5094_r126204 "Neuro-
protective
effect" with graphId ee1d7
http://classic.wikipathways.org/instance/WP5094_r126204 "Increased
glucose
utilization in
hypothalamic
neurons" with graphId a1342
http://classic.wikipathways.org/instance/WP5094_r126204 "Adenylate
cyclase" with graphId cff6b
http://classic.wikipathways.org/instance/WP5094_r126204 " Regulation
of receptor
internalization" with graphId d26fd
http://classic.wikipathways.org/instance/WP5094_r126204 "Catecholamine
biosynthesis
in adrenal
medullary cells" with graphId e6e90
http://classic.wikipathways.org/instance/WP5094_r126204 "Promotes
osteogenic
differentiation
& mineralization" with graphId f456c
http://classic.wikipathways.org/instance/WP5094_r126204 "In differentiated
3T3-L1 adipocytes" with graphId d166a
http://classic.wikipathways.org/instance/WP5094_r126204 "Activation
of PDH and
Mitochondrial
glucose
oxidation in
Hep3B/G2 cells" with graphId f1b93
http://classic.wikipathways.org/instance/WP5094_r126204 "Activation
of PDH and
Suppresion
of lactate
production
in adipocytes" with graphId fe496
http://classic.wikipathways.org/instance/WP5094_r126204 "Orexin B" with graphId fa3e7
http://classic.wikipathways.org/instance/WP5094_r126204 "In subcutaneous
HCRTR1 and R2
mRNA expressing
adipose tissue
explants" with graphId b3688
http://classic.wikipathways.org/instance/WP5094_r126204 "Regulation of
expression of
HCRTR1 in
INS-1 cells" with graphId e2a87
http://classic.wikipathways.org/instance/WP5094_r126204 "Regulation of
expression of
HCRTR1/2 in
Primary anterior
pituatory cells" with graphId d8fe3
http://classic.wikipathways.org/instance/WP5094_r126204 "In anoxia /
hypoglycemic
astrocytes" with graphId a6dd7
http://classic.wikipathways.org/instance/WP5094_r126204 "Potential
regulation of
hypothalamic-
pituitary-
gonadal axis" with graphId f3274
http://classic.wikipathways.org/instance/WP5094_r126204 "Increased HCRTR1
expression
counteracts
testosterone-
induced nuclear
transloaction of
Androgen Receptor
in LnCaP cells" with graphId e3094
http://classic.wikipathways.org/instance/WP5094_r126204 "Regulation of
Mesenchymal
Stem Cell
Differentiation" with graphId b2372
Possible MIM translocation
Interactions between identical nodes: 9
http://classic.wikipathways.org/instance/WP5094_r126204 http://rdf.wikipathways.org/Pathway/WP5094_r126204/WP/Interaction/dcd76 "Glucose" (https://identifiers.org/kegg.compound/C00031) and
Glucose" (https://identifiers.org/kegg.compound/C00031)
http://classic.wikipathways.org/instance/WP5094_r126204 http://rdf.wikipathways.org/Pathway/WP5094_r126204/WP/Interaction/c3d6f "Glutamic acid" (https://identifiers.org/kegg.compound/C00025) and
Glutamic acid" (https://identifiers.org/kegg.compound/C00025)
http://classic.wikipathways.org/instance/WP5094_r126204 http://rdf.wikipathways.org/Pathway/WP5094_r126204/WP/Interaction/c3d6f "Glutamic acid" (https://identifiers.org/kegg.compound/C00025) and
Glutamic acid uptake" (https://identifiers.org/kegg.compound/C00025)
http://classic.wikipathways.org/instance/WP5094_r126204 http://rdf.wikipathways.org/Pathway/WP5094_r126204/WP/Interaction/c3d6f "Glutamic acid uptake" (https://identifiers.org/kegg.compound/C00025) and
Glutamic acid" (https://identifiers.org/kegg.compound/C00025)
http://classic.wikipathways.org/instance/WP5094_r126204 http://rdf.wikipathways.org/Pathway/WP5094_r126204/WP/Interaction/c3d6f "Glutamic acid uptake" (https://identifiers.org/kegg.compound/C00025) and
Glutamic acid uptake" (https://identifiers.org/kegg.compound/C00025)
http://classic.wikipathways.org/instance/WP5094_r126204 http://rdf.wikipathways.org/Pathway/WP5094_r126204/WP/Interaction/e194f "Ca2+" (https://identifiers.org/kegg.compound/C00076) and
Ca2+" (https://identifiers.org/kegg.compound/C00076)
http://classic.wikipathways.org/instance/WP5094_r126204 http://rdf.wikipathways.org/Pathway/WP5094_r126204/WP/Interaction/a55b0 "Cytochrome C" (https://identifiers.org/kegg.compound/C00125) and
Cytochrome C" (https://identifiers.org/kegg.compound/C00125)
http://classic.wikipathways.org/instance/WP5094_r126204 http://rdf.wikipathways.org/Pathway/WP5094_r126204/WP/Interaction/aeb21 "Ca2+" (https://identifiers.org/kegg.compound/C00076) and
Ca2+" (https://identifiers.org/kegg.compound/C00076)
http://classic.wikipathways.org/instance/WP5094_r126204 http://rdf.wikipathways.org/Pathway/WP5094_r126204/WP/Interaction/a76e3 "Glucose" (https://identifiers.org/kegg.compound/C00031) and
Glucose" (https://identifiers.org/kegg.compound/C00031)
More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations