wikipathways-collection

WikiPathways WP5090

• WikiPathways: WP5090 (classic)
• Species: Homo sapiens
• Scholia: WP5090

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 2
  • UnconnectedPoints: .x we found 1 problem(s):
    • Interactions with unconnected points: 19
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 6
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 8 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• UnicodeTests
  • water: .x we found 1 problem(s):
    • Metabolite can use H₂O instead of H2O: 1
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 21
• Number of tests: 122
• Number of assertions: 245
• Number of fails: 4

Fails

Interactions with Labels

Interactions found that involve Labels: 2

• http://classic.wikipathways.org/instance/WP5090_r134372 “Antibodies” with graphId f72a0
• http://classic.wikipathways.org/instance/WP5090_r134372 “Apoptosis” with graphId bb92b

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels

Interactions with unconnected points

Interactions with unconnected points: 19

• http://classic.wikipathways.org/instance/WP5090_r134372

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/UnconnectedPoints

Possible MIM translocation

Interactions between identical nodes: 6

• http://classic.wikipathways.org/instance/WP5090_r134372 http://rdf.wikipathways.org/Pathway/WP5090_r134372/WP/Interaction/idd17b68a “C3bi” (https://identifiers.org/reactome/R-HSA-166832) and C3bi” (https://identifiers.org/reactome/R-HSA-166832)
• http://classic.wikipathways.org/instance/WP5090_r134372 http://rdf.wikipathways.org/Pathway/WP5090_r134372/WP/Interaction/idd17b68a “C3bi” (https://identifiers.org/reactome/R-HSA-166832) and C3b” (https://identifiers.org/reactome/R-HSA-166832)
• http://classic.wikipathways.org/instance/WP5090_r134372 http://rdf.wikipathways.org/Pathway/WP5090_r134372/WP/Interaction/idd17b68a “C3b” (https://identifiers.org/reactome/R-HSA-166832) and C3bi” (https://identifiers.org/reactome/R-HSA-166832)
• http://classic.wikipathways.org/instance/WP5090_r134372 http://rdf.wikipathways.org/Pathway/WP5090_r134372/WP/Interaction/idd17b68a “C3b” (https://identifiers.org/reactome/R-HSA-166832) and C3b” (https://identifiers.org/reactome/R-HSA-166832)
• http://classic.wikipathways.org/instance/WP5090_r134372 http://rdf.wikipathways.org/Pathway/WP5090_r134372/WP/Interaction/id3be957f1_1 “Phosphatidylserine” (https://identifiers.org/chebi/CHEBI:18303) and Phosphatidylserine” (https://identifiers.org/chebi/CHEBI:18303)
• http://classic.wikipathways.org/instance/WP5090_r134372 http://rdf.wikipathways.org/Pathway/WP5090_r134372/WP/Interaction/id3be957f1_2 “Phosphatidylserine” (https://identifiers.org/chebi/CHEBI:18303) and Phosphatidylserine” (https://identifiers.org/chebi/CHEBI:18303)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations

Water chemical formula can use Unicode

Metabolite can use H₂O instead of H2O: 1

* [http://classic.wikipathways.org/instance/WP5090_r134372](http://classic.wikipathways.org/instance/WP5090_r134372)

More details at https://www.wikipathways.org/WikiPathwaysCurator/UnicodeTests/water