wikipathways-collection

WikiPathways WP5087

• WikiPathways: WP5087 (classic)
• Species: Homo sapiens
• Scholia: WP5087

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 20
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 18
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 2

Fails

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 20

http://classic.wikipathways.org/instance/WP5087_r127398 "Tumor-associated macrophages" with graphId abc58
http://classic.wikipathways.org/instance/WP5087_r127398 "Degradation" with graphId b753a
http://classic.wikipathways.org/instance/WP5087_r127398 "Cell growth,
differentiation" with graphId b7a91
http://classic.wikipathways.org/instance/WP5087_r127398 "T-Lymphocytes" with graphId d173d
http://classic.wikipathways.org/instance/WP5087_r127398 "Integrins" with graphId fd735
http://classic.wikipathways.org/instance/WP5087_r127398 "Cancer-associated fibroblasts" with graphId c3977
http://classic.wikipathways.org/instance/WP5087_r127398 "Stiff and 
fibronectin rich ECM" with graphId f5a99
http://classic.wikipathways.org/instance/WP5087_r127398 "AP-1 dependent 
genes/Repair genes" with graphId e6e0b
http://classic.wikipathways.org/instance/WP5087_r127398 "Myeloid-Derived Suppressor Cells" with graphId ef493
http://classic.wikipathways.org/instance/WP5087_r127398 "Transcription" with graphId c8b93
http://classic.wikipathways.org/instance/WP5087_r127398 "DNA-damage" with graphId ed5e3
http://classic.wikipathways.org/instance/WP5087_r127398 "Cell growth" with graphId b6038
http://classic.wikipathways.org/instance/WP5087_r127398 "Growth arrest" with graphId ed2d9
http://classic.wikipathways.org/instance/WP5087_r127398 "Other chemokines/
cytokines" with graphId f30c3
http://classic.wikipathways.org/instance/WP5087_r127398 "Inflammatory cytokines,
cellular stresses" with graphId f66b6
http://classic.wikipathways.org/instance/WP5087_r127398 "Chemokines, Cytokines,
Pro-angiogenic factors" with graphId f28b9
http://classic.wikipathways.org/instance/WP5087_r127398 "Chemokines, Cytokines,
Pro-angiogenic factors" with graphId bc02c
http://classic.wikipathways.org/instance/WP5087_r127398 "Metastasis
Angiogenesis
DNA methylation
Genetic aberrations
Cell survival & growth
Replicative immortality" with graphId bcb44
http://classic.wikipathways.org/instance/WP5087_r127398 "Cell survival" with graphId d24dd
http://classic.wikipathways.org/instance/WP5087_r127398 "Tumorigenesis & Proliferation" with graphId a67ef

Possible MIM translocation

Interactions between identical nodes: 18

http://classic.wikipathways.org/instance/WP5087_r127398 http://rdf.wikipathways.org/Pathway/WP5087_r127398/WP/Interaction/id7d820536 "Pro IL-1B" (https://identifiers.org/ensembl/ENSG00000125538) and 
Pro IL-1B" (https://identifiers.org/ensembl/ENSG00000125538)
http://classic.wikipathways.org/instance/WP5087_r127398 http://rdf.wikipathways.org/Pathway/WP5087_r127398/WP/Interaction/id7d820536 "Pro IL-1B" (https://identifiers.org/ensembl/ENSG00000125538) and 
IL-1B" (https://identifiers.org/ensembl/ENSG00000125538)
http://classic.wikipathways.org/instance/WP5087_r127398 http://rdf.wikipathways.org/Pathway/WP5087_r127398/WP/Interaction/id7d820536 "IL-1B" (https://identifiers.org/ensembl/ENSG00000125538) and 
Pro IL-1B" (https://identifiers.org/ensembl/ENSG00000125538)
http://classic.wikipathways.org/instance/WP5087_r127398 http://rdf.wikipathways.org/Pathway/WP5087_r127398/WP/Interaction/id7d820536 "IL-1B" (https://identifiers.org/ensembl/ENSG00000125538) and 
IL-1B" (https://identifiers.org/ensembl/ENSG00000125538)
http://classic.wikipathways.org/instance/WP5087_r127398 http://rdf.wikipathways.org/Pathway/WP5087_r127398/WP/Interaction/id51322b50 "MDM2" (https://identifiers.org/ensembl/ENSG00000135679) and 
MDM2" (https://identifiers.org/ensembl/ENSG00000135679)
http://classic.wikipathways.org/instance/WP5087_r127398 http://rdf.wikipathways.org/Pathway/WP5087_r127398/WP/Interaction/cf7e3 "glucose" (https://identifiers.org/chebi/CHEBI:17234) and 
glucose" (https://identifiers.org/chebi/CHEBI:17234)
http://classic.wikipathways.org/instance/WP5087_r127398 http://rdf.wikipathways.org/Pathway/WP5087_r127398/WP/Interaction/id5141967 "CYCS" (https://identifiers.org/ensembl/ENSG00000172115) and 
CYCS" (https://identifiers.org/ensembl/ENSG00000172115)
http://classic.wikipathways.org/instance/WP5087_r127398 http://rdf.wikipathways.org/Pathway/WP5087_r127398/WP/Interaction/fe21b "Tryptophan" (https://identifiers.org/chebi/CHEBI:16828) and 
Tryptophan" (https://identifiers.org/chebi/CHEBI:16828)
http://classic.wikipathways.org/instance/WP5087_r127398 http://rdf.wikipathways.org/Pathway/WP5087_r127398/WP/Interaction/e146d "Arginine" (https://identifiers.org/chebi/CHEBI:29016) and 
Arginine" (https://identifiers.org/chebi/CHEBI:29016)
http://classic.wikipathways.org/instance/WP5087_r127398 http://rdf.wikipathways.org/Pathway/WP5087_r127398/WP/Interaction/id369f4a02 "HMGB1" (https://identifiers.org/ensembl/ENSG00000189403) and 
HMGB1" (https://identifiers.org/ensembl/ENSG00000189403)
http://classic.wikipathways.org/instance/WP5087_r127398 http://rdf.wikipathways.org/Pathway/WP5087_r127398/WP/Interaction/id63d8358f "Ca2+" (https://identifiers.org/chebi/CHEBI:29108) and 
Ca2+" (https://identifiers.org/chebi/CHEBI:29108)
http://classic.wikipathways.org/instance/WP5087_r127398 http://rdf.wikipathways.org/Pathway/WP5087_r127398/WP/Interaction/idd3be9b18 "Ca2+" (https://identifiers.org/chebi/CHEBI:29108) and 
Ca2+" (https://identifiers.org/chebi/CHEBI:29108)
http://classic.wikipathways.org/instance/WP5087_r127398 http://rdf.wikipathways.org/Pathway/WP5087_r127398/WP/Interaction/f0b13 "FN1" (https://identifiers.org/ensembl/ENSG00000115414) and 
FN1" (https://identifiers.org/ensembl/ENSG00000115414)
http://classic.wikipathways.org/instance/WP5087_r127398 http://rdf.wikipathways.org/Pathway/WP5087_r127398/WP/Interaction/id287b2937 "Pro IL-1B" (https://identifiers.org/ensembl/ENSG00000125538) and 
Pro IL-1B" (https://identifiers.org/ensembl/ENSG00000125538)
http://classic.wikipathways.org/instance/WP5087_r127398 http://rdf.wikipathways.org/Pathway/WP5087_r127398/WP/Interaction/id287b2937 "Pro IL-1B" (https://identifiers.org/ensembl/ENSG00000125538) and 
IL-1B" (https://identifiers.org/ensembl/ENSG00000125538)
http://classic.wikipathways.org/instance/WP5087_r127398 http://rdf.wikipathways.org/Pathway/WP5087_r127398/WP/Interaction/id287b2937 "IL-1B" (https://identifiers.org/ensembl/ENSG00000125538) and 
Pro IL-1B" (https://identifiers.org/ensembl/ENSG00000125538)
http://classic.wikipathways.org/instance/WP5087_r127398 http://rdf.wikipathways.org/Pathway/WP5087_r127398/WP/Interaction/id287b2937 "IL-1B" (https://identifiers.org/ensembl/ENSG00000125538) and 
IL-1B" (https://identifiers.org/ensembl/ENSG00000125538)
http://classic.wikipathways.org/instance/WP5087_r127398 http://rdf.wikipathways.org/Pathway/WP5087_r127398/WP/Interaction/id88ea942b "HMGB1" (https://identifiers.org/ensembl/ENSG00000189403) and 
HMGB1" (https://identifiers.org/ensembl/ENSG00000189403)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations