wikipathways-collection

WikiPathways WP5026

• WikiPathways: WP5026 (classic)
• Species: Homo sapiens
• Scholia: WP5026

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 5
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 6 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 9 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 11 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests
  • nonNumericPubMedIDs: .. all OK!
  • unexpectedPubMedIdentifier: .. all OK!
  • zeroPubMedIDs: .. all OK!
  • atLeastOneReference: .x we found 1 problem(s):
    • Found 1 pathways with zero (PubMed) references
  • citesRetractedArticle: .. all OK!
  • outdatedPubMedIdentifiers: .. all OK!
• Sec2PriProjectTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• UnicodeTests
  • water: .. all OK!
  • calcium: .. all OK!
  • hydron: .. all OK!
  • sodium: .. all OK!
  • potassium: .. all OK!
  • oxygen: .. all OK!
  • carbondioxide: .. all OK!
  • iron2: .. all OK!
  • iron3: .. all OK!
  • copper: .. all OK!
  • copper2: .. all OK!
  • manganese: .. all OK!
  • magnesium: .. all OK!
  • ammonia: .x we found 1 problem(s):
    • Metabolite can use NH₃ instead of NH3: 1
  • chloride: .. all OK!
  • bicarbonate: .. all OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 22
• Number of tests: 147
• Number of assertions: 293
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 5

• http://classic.wikipathways.org/instance/WP5026_r140666 http://rdf.wikipathways.org/Pathway/WP5026_r140666/DataNode/bebca (Glutamic)
• http://classic.wikipathways.org/instance/WP5026_r140666 http://rdf.wikipathways.org/Pathway/WP5026_r140666/DataNode/d18c7 (Glutamic-semialdehyde)
• http://classic.wikipathways.org/instance/WP5026_r140666 http://rdf.wikipathways.org/Pathway/WP5026_r140666/DataNode/c0d98 (OH-proline)
• http://classic.wikipathways.org/instance/WP5026_r140666 http://rdf.wikipathways.org/Pathway/WP5026_r140666/DataNode/d00f6 (X-OH-proline)
• http://classic.wikipathways.org/instance/WP5026_r140666 http://rdf.wikipathways.org/Pathway/WP5026_r140666/DataNode/f2497 (X-proline)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

At least one reference

Found 1 pathways with zero (PubMed) references

• http://classic.wikipathways.org/instance/WP5026_r140666 ‘Proline and hydroxyproline pathways’ in Homo sapiens has zero references;

More details at https://www.wikipathways.org/WikiPathwaysCurator/ReferencesTests/atLeastOneReference

The ammonia formula can use Unicode

Metabolite can use NH₃ instead of NH3: 1

• http://classic.wikipathways.org/instance/WP5026_r140666

More details at https://www.wikipathways.org/WikiPathwaysCurator/UnicodeTests/ammonia