wikipathways-collection

WikiPathways WP5023

• WikiPathways: WP5023 (classic)
• Species: Mus musculus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 6
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 2
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 6

http://classic.wikipathways.org/instance/WP5023_r128731 http://rdf.wikipathways.org/Pathway/WP5023_r128731/DataNode/a9102 (Myotube formation)
http://classic.wikipathways.org/instance/WP5023_r128731 http://rdf.wikipathways.org/Pathway/WP5023_r128731/DataNode/b120c (RB)
http://classic.wikipathways.org/instance/WP5023_r128731 http://rdf.wikipathways.org/Pathway/WP5023_r128731/DataNode/e0572 (Self renewal)
http://classic.wikipathways.org/instance/WP5023_r128731 http://rdf.wikipathways.org/Pathway/WP5023_r128731/DataNode/d4e1f (WNT non canonical)
http://classic.wikipathways.org/instance/WP5023_r128731 http://rdf.wikipathways.org/Pathway/WP5023_r128731/DataNode/d68cb (miR1
)
http://classic.wikipathways.org/instance/WP5023_r128731 http://rdf.wikipathways.org/Pathway/WP5023_r128731/DataNode/b30cf (miR206)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

DataNodesTests.unknownTypes

The following DataNodes have Unknown @Type: 2

http://classic.wikipathways.org/instance/WP5023_r128731 http://rdf.wikipathways.org/Pathway/WP5023_r128731/DataNode/eb500 (Hypoxia)
http://classic.wikipathways.org/instance/WP5023_r128731 http://rdf.wikipathways.org/Pathway/WP5023_r128731/DataNode/a9102 (Myotube formation)