wikipathways-collection

WikiPathways WP4962

• WikiPathways: WP4962 (classic)
• Species: Homo sapiens
• Scholia: WP4962

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 4
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .x we found 1 problem(s):
    • Unexpected non-metabolite to metabolite conversions: 1
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 2
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 3
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 4

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 4

http://classic.wikipathways.org/instance/WP4962_r122013 http://rdf.wikipathways.org/Pathway/WP4962_r122013/DataNode/e97aa (ROCC)
http://classic.wikipathways.org/instance/WP4962_r122013 http://rdf.wikipathways.org/Pathway/WP4962_r122013/DataNode/f1173 (RhoGAP)
http://classic.wikipathways.org/instance/WP4962_r122013 http://rdf.wikipathways.org/Pathway/WP4962_r122013/DataNode/bc43c (SOCC)
http://classic.wikipathways.org/instance/WP4962_r122013 http://rdf.wikipathways.org/Pathway/WP4962_r122013/DataNode/d1858 (VGCC)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.noNonMetaboliteToMetaboliteConversions

Unexpected non-metabolite to metabolite conversions: 1

Homo sapiens http://classic.wikipathways.org/instance/WP4962_r122013 -> https://identifiers.org/ensembl/ENSG00000182621 https://identifiers.org/chebi/CHEBI:18348 http://rdf.wikipathways.org/Pathway/WP4962_r122013/WP/Interaction/id418c9d8f

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 2

http://classic.wikipathways.org/instance/WP4962_r122013 "GEFs" with graphId ba758
http://classic.wikipathways.org/instance/WP4962_r122013 "Beta agonists" with graphId bddcc

Possible MIM translocation

Interactions between identical nodes: 3

http://classic.wikipathways.org/instance/WP4962_r122013 http://rdf.wikipathways.org/Pathway/WP4962_r122013/WP/Interaction/fda75 "Ca2+" (https://identifiers.org/chebi/CHEBI:29108) and 
Ca2+" (https://identifiers.org/chebi/CHEBI:29108)
http://classic.wikipathways.org/instance/WP4962_r122013 http://rdf.wikipathways.org/Pathway/WP4962_r122013/WP/Interaction/id16ba1c7 "Ca2+" (https://identifiers.org/chebi/CHEBI:29108) and 
Ca2+" (https://identifiers.org/chebi/CHEBI:29108)
http://classic.wikipathways.org/instance/WP4962_r122013 http://rdf.wikipathways.org/Pathway/WP4962_r122013/WP/Interaction/id767d61d0 "Ca2+" (https://identifiers.org/chebi/CHEBI:29108) and 
Ca2+" (https://identifiers.org/chebi/CHEBI:29108)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations