wikipathways-collection

WikiPathways WP4950

• WikiPathways: WP4950 (classic)
• Species: Homo sapiens
• Scholia: WP4950

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 1
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 3
  • UnconnectedPoints: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 1
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 8 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 121
• Number of assertions: 243
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 1

• http://classic.wikipathways.org/instance/WP4950_r128400 http://rdf.wikipathways.org/Pathway/WP4950_r128400/DataNode/dce37 (CD19/CD21 complex)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Interactions with Labels

Interactions found that involve Labels: 3

• http://classic.wikipathways.org/instance/WP4950_r128400 “unknown function” with graphId c0be4
• http://classic.wikipathways.org/instance/WP4950_r128400 “function suspected in mitochondria involved in disease syndromes, such as s ensorineural deafness, diabetes, and retinopathy” with graphId e9cdf
• http://classic.wikipathways.org/instance/WP4950_r128400 “transporter” with graphId ae23c

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels

Possible MIM translocation

Interactions between identical nodes: 1

• http://classic.wikipathways.org/instance/WP4950_r128400 http://rdf.wikipathways.org/Pathway/WP4950_r128400/WP/Interaction/id9bcd3398 “Ca2+” (https://identifiers.org/chebi/CHEBI:29108) and Ca2+” (https://identifiers.org/chebi/CHEBI:29108)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations