wikipathways-collection

WikiPathways WP4949

• WikiPathways: WP4949 (classic)
• Species: Homo sapiens
• Scholia: WP4949

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 2
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 11
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 2

• http://classic.wikipathways.org/instance/WP4949_r134607 http://rdf.wikipathways.org/Pathway/WP4949_r134607/DataNode/e3a44 (INO80 complex )
• http://classic.wikipathways.org/instance/WP4949_r134607 http://rdf.wikipathways.org/Pathway/WP4949_r134607/DataNode/c5a76 (Phosphoprotein Phosphatase 4 complex)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 11

http://classic.wikipathways.org/instance/WP4949_r134607 "mitosis" with graphId f2b2f
http://classic.wikipathways.org/instance/WP4949_r134607 "Transcription factor 
regulating
mesoderm specification
mesoderm segmentation
(in zebrafish)" with graphId a66f2
http://classic.wikipathways.org/instance/WP4949_r134607 "Lymphocyte trafficking
Lympthocyte polarization" with graphId f324c
http://classic.wikipathways.org/instance/WP4949_r134607 "involved in
sperm and egg
fusion" with graphId c4f3a
http://classic.wikipathways.org/instance/WP4949_r134607 "unknown function" with graphId e8c8e
http://classic.wikipathways.org/instance/WP4949_r134607 "Stress" with graphId b4e8e
http://classic.wikipathways.org/instance/WP4949_r134607 "Function unclear
involved in neuronal ER
trafficking" with graphId fa69f
http://classic.wikipathways.org/instance/WP4949_r134607 "exact function unknown 
but involved
in movement disorders in 
genetic epilepsies " with graphId f9384
http://classic.wikipathways.org/instance/WP4949_r134607 "excitotoxic to neurons" with graphId a67e4
http://classic.wikipathways.org/instance/WP4949_r134607 "KCTD13 deficient mice
- synaptic formation
- mature spine density in hippocampus" with graphId aeb74
http://classic.wikipathways.org/instance/WP4949_r134607 "Function unclear
Enzymatic activity
dioxygenase activity" with graphId f78ac