wikipathways-collection

WikiPathways WP4942

• WikiPathways: WP4942
• Scholia: WP4942

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 4 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 4 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 3 tests OK!
• GeneralTests
  • curationAndHypothetical: .. all OK!
  • curationAndNeedsWork: .. all OK!
  • curationAndReactome: .. all OK!
  • dataNodeWithoutGraphId: .. all OK!
  • duplicateTitles: .. all OK!
  • emptyLabelOfNodeWithIdentifier: .. all OK!
  • groupsHaveDetail: .. all OK!
  • noTags: .. all OK!
  • nullDataSources: .. all OK!
  • titlesShortEnough: .. all OK!
  • undefinedDataSources: .. all OK!
  • undefinedIdentifier: .. all OK!
  • weirdCharacterTitles: .x we found 1 problem(s):
    • Titles with unexpected characters (only allow alphanumerics and spaces):1
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 11
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 6 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 4 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 93
• Number of assertions: 186
• Number of fails: 2

Fails

GeneralTests.weirdCharacterTitles

Titles with unexpected characters (only allow alphanumerics and spaces):1

http://www.wikipathways.org/instance/WP4942_rr115789 '15q13.3 copy number variation syndrome' has 1 weird characters

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 11

http://www.wikipathways.org/instance/WP4942_rr115789 "exact function unclear
possibly involved in golgi
apparatus organization
stacking of cristae" with graphId eacad
http://www.wikipathways.org/instance/WP4942_rr115789 "light" with graphId c7b69
http://www.wikipathways.org/instance/WP4942_rr115789 "dendritic growth
neuronal 
development
ASD risk gene" with graphId e85b1
http://www.wikipathways.org/instance/WP4942_rr115789 "unspecific 
cation channel" with graphId c46eb
http://www.wikipathways.org/instance/WP4942_rr115789 "neocortex 
development" with graphId e7261
http://www.wikipathways.org/instance/WP4942_rr115789 "exact function unclear
possibly involved in golgi
apparatus organization
stacking of cristae" with graphId d97fb
http://www.wikipathways.org/instance/WP4942_rr115789 "increased Ca2+ flux
upon stimulation" with graphId b6d27
http://www.wikipathways.org/instance/WP4942_rr115789 "unclear 
function" with graphId c520d
http://www.wikipathways.org/instance/WP4942_rr115789 "tumor growth" with graphId e15a3
http://www.wikipathways.org/instance/WP4942_rr115789 "recruitment and 
stimulation of
leukocytes and NKs" with graphId bf5e6
http://www.wikipathways.org/instance/WP4942_rr115789 "Function unclear
Inactive phosphatidyl-
inositol 3-phosphatase 10
Source: https://www.uniprot.org/uniprot/Q9NXD2" with graphId f87a0