wikipathways-collection

WikiPathways WP4879

• WikiPathways: WP4879 (classic)
• Species: Homo sapiens
• Scholia: WP4879

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 40
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 1

Fails

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 40

http://classic.wikipathways.org/instance/WP4879_r134355 "Muscle fibers" with graphId eea7a
http://classic.wikipathways.org/instance/WP4879_r134355 "ROS" with graphId afa47
http://classic.wikipathways.org/instance/WP4879_r134355 "Ubiquitin-mediated
proteasome degradation" with graphId bfe4f
http://classic.wikipathways.org/instance/WP4879_r134355 "Histones" with graphId dca43
http://classic.wikipathways.org/instance/WP4879_r134355 "Histones" with graphId daa47
http://classic.wikipathways.org/instance/WP4879_r134355 "Sacromeres" with graphId b5e35
http://classic.wikipathways.org/instance/WP4879_r134355 "S phase proteins 
Apoptosis" with graphId cdd24
http://classic.wikipathways.org/instance/WP4879_r134355 "Impaired myoblast differentiation /
myofiber degeneration" with graphId eed49
http://classic.wikipathways.org/instance/WP4879_r134355 "Cell cycle 
Biochemical block / 
Apoptosis" with graphId c8ad7
http://classic.wikipathways.org/instance/WP4879_r134355 "LINC complex" with graphId e8fe7
http://classic.wikipathways.org/instance/WP4879_r134355 "Dunnigan-type familial partial 
lipodystrophy" with graphId b1b03
http://classic.wikipathways.org/instance/WP4879_r134355 "Impaired expansion/ differentiation
of WAT" with graphId e7b9e
http://classic.wikipathways.org/instance/WP4879_r134355 "Myogenic differentiation" with graphId deffb
http://classic.wikipathways.org/instance/WP4879_r134355 "Adipogenic stimuli
e.g. glutocorticoids" with graphId ef7c2
http://classic.wikipathways.org/instance/WP4879_r134355 "Adipocyte genes" with graphId f24b4
http://classic.wikipathways.org/instance/WP4879_r134355 "Terminal differentiation" with graphId c54c7
http://classic.wikipathways.org/instance/WP4879_r134355 "Overexpression of proteins involved 
in oxidative metabolism" with graphId c0ef7
http://classic.wikipathways.org/instance/WP4879_r134355 "Osteogenic genes" with graphId f2384
http://classic.wikipathways.org/instance/WP4879_r134355 "Rho mediated actin 
polymerization" with graphId b3ed0
http://classic.wikipathways.org/instance/WP4879_r134355 "Tissue fibrosis in 
straited muscle" with graphId f6509
http://classic.wikipathways.org/instance/WP4879_r134355 "Cytoskeleton" with graphId a4750
http://classic.wikipathways.org/instance/WP4879_r134355 "mechanical force" with graphId b9cdb
http://classic.wikipathways.org/instance/WP4879_r134355 "Cell stimulation" with graphId dcefb
http://classic.wikipathways.org/instance/WP4879_r134355 "Null mutations" with graphId f3ffa
http://classic.wikipathways.org/instance/WP4879_r134355 "Akt/mTOR signaling" with graphId a5694
http://classic.wikipathways.org/instance/WP4879_r134355 "Preadipocyte senescence" with graphId daa35
http://classic.wikipathways.org/instance/WP4879_r134355 "Restrictive dermopathy" with graphId a068e
http://classic.wikipathways.org/instance/WP4879_r134355 "Decreased nuclear stability / 
abnormal morphology /
impaired mechanotransduction/
decreased cytoskeletal stiffness" with graphId dbb79
http://classic.wikipathways.org/instance/WP4879_r134355 "Dilated cardiomyopathy" with graphId ab055
http://classic.wikipathways.org/instance/WP4879_r134355 "Notch target genes" with graphId f4315
http://classic.wikipathways.org/instance/WP4879_r134355 "Contractile impairment
Myofiber defects
Cell death" with graphId a8730
http://classic.wikipathways.org/instance/WP4879_r134355 "Rb proteasomal 
degradation" with graphId af399
http://classic.wikipathways.org/instance/WP4879_r134355 "Myogenic differentiation
targets " with graphId b8983
http://classic.wikipathways.org/instance/WP4879_r134355 "Mandibuloacral dysplasia A" with graphId a22e2
http://classic.wikipathways.org/instance/WP4879_r134355 "Increased osteoclastogenesis /
osteoblast differentiation / 
ex matrix remodeling" with graphId b4409
http://classic.wikipathways.org/instance/WP4879_r134355 "aaX" with graphId c5d57
http://classic.wikipathways.org/instance/WP4879_r134355 "26S proteasome 
degradation" with graphId d1687
http://classic.wikipathways.org/instance/WP4879_r134355 "Skeletal dysplasia / 
increased fatty deposits 
in bone marrow" with graphId ed156
http://classic.wikipathways.org/instance/WP4879_r134355 "Lamin A intranuclear 
foci" with graphId a99d1
http://classic.wikipathways.org/instance/WP4879_r134355 "Clonal expansion" with graphId daf18