wikipathways-collection

WikiPathways WP4815

• WikiPathways: WP4815 (classic)
• Species: Homo sapiens
• Scholia: WP4815

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 4
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 35
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests
  • nonNumericPubMedIDs: .. all OK!
  • unexpectedPubMedIdentifier: .. all OK!
  • zeroPubMedIDs: .. all OK!
  • atLeastOneReference: .x we found 1 problem(s):
    • Found 1 pathways with zero (PubMed) references
  • citesRetractedArticle: .. all OK!
  • outdatedPubMedIdentifiers: .. all OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 4

http://classic.wikipathways.org/instance/WP4815_r110276 http://rdf.wikipathways.org/Pathway/WP4815_r110276/DataNode/aad05 (GeneProduct)
http://classic.wikipathways.org/instance/WP4815_r110276 http://rdf.wikipathways.org/Pathway/WP4815_r110276/DataNode/bc0ea (GeneProduct)
http://classic.wikipathways.org/instance/WP4815_r110276 http://rdf.wikipathways.org/Pathway/WP4815_r110276/DataNode/e3275 (GeneProduct)
http://classic.wikipathways.org/instance/WP4815_r110276 http://rdf.wikipathways.org/Pathway/WP4815_r110276/DataNode/fc4a4 (GeneProduct)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 35

http://classic.wikipathways.org/instance/WP4815_r110276 "S" with graphId a3dfb
http://classic.wikipathways.org/instance/WP4815_r110276 "GlcNalpha" with graphId c5917
http://classic.wikipathways.org/instance/WP4815_r110276 "Chondroitin sulfate biosynthesis" with graphId dae82
http://classic.wikipathways.org/instance/WP4815_r110276 "Galbeta" with graphId d96f0
http://classic.wikipathways.org/instance/WP4815_r110276 "GalbetaGlcNAcbeta" with graphId cf378
http://classic.wikipathways.org/instance/WP4815_r110276 "GlcAalpha" with graphId f31e0
http://classic.wikipathways.org/instance/WP4815_r110276 "GlcNAcalpha" with graphId fa0e6
http://classic.wikipathways.org/instance/WP4815_r110276 "S" with graphId cab41
http://classic.wikipathways.org/instance/WP4815_r110276 "Galbeta" with graphId ae56f
http://classic.wikipathways.org/instance/WP4815_r110276 "S" with graphId c051f
http://classic.wikipathways.org/instance/WP4815_r110276 "GalNAc" with graphId f3ea6
http://classic.wikipathways.org/instance/WP4815_r110276 "S" with graphId b40fb
http://classic.wikipathways.org/instance/WP4815_r110276 "GlcAbeta" with graphId da886
http://classic.wikipathways.org/instance/WP4815_r110276 "GlcNAcbeta" with graphId c142d
http://classic.wikipathways.org/instance/WP4815_r110276 "GlcNAc" with graphId d4158
http://classic.wikipathways.org/instance/WP4815_r110276 "GlcAbeta" with graphId f3110
http://classic.wikipathways.org/instance/WP4815_r110276 "Heparan sulfate biosynthesis" with graphId c3229
http://classic.wikipathways.org/instance/WP4815_r110276 "S" with graphId f1136
http://classic.wikipathways.org/instance/WP4815_r110276 "GlcNAcbeta" with graphId c62ea
http://classic.wikipathways.org/instance/WP4815_r110276 "IdoAbeta" with graphId a9fea
http://classic.wikipathways.org/instance/WP4815_r110276 "GlcAbeta" with graphId bc394
http://classic.wikipathways.org/instance/WP4815_r110276 "GalNAcbeta" with graphId a7fd5
http://classic.wikipathways.org/instance/WP4815_r110276 "S" with graphId d535f
http://classic.wikipathways.org/instance/WP4815_r110276 "S" with graphId c644c
http://classic.wikipathways.org/instance/WP4815_r110276 "GlcAbeta" with graphId abff9
http://classic.wikipathways.org/instance/WP4815_r110276 "S" with graphId b3336
http://classic.wikipathways.org/instance/WP4815_r110276 "GlcNAcalpha" with graphId b89b1
http://classic.wikipathways.org/instance/WP4815_r110276 "GlcAbeta" with graphId f16e8
http://classic.wikipathways.org/instance/WP4815_r110276 "S" with graphId b6c38
http://classic.wikipathways.org/instance/WP4815_r110276 "S" with graphId be249
http://classic.wikipathways.org/instance/WP4815_r110276 "Keratan sulfate biosynthesis" with graphId f7d7a
http://classic.wikipathways.org/instance/WP4815_r110276 "GalNAc" with graphId dbdc3
http://classic.wikipathways.org/instance/WP4815_r110276 "S" with graphId c6fad
http://classic.wikipathways.org/instance/WP4815_r110276 "IdoAbeta" with graphId a3754
http://classic.wikipathways.org/instance/WP4815_r110276 "S" with graphId de785

At least one reference

Found 1 pathways with zero (PubMed) references

* [http://classic.wikipathways.org/instance/WP4815_r110276](http://classic.wikipathways.org/instance/WP4815_r110276) 'Glycosaminoglycan degradation' in Homo sapiens has zero references; 

More details at https://www.wikipathways.org/WikiPathwaysCurator/ReferencesTests/atLeastOneReference