wikipathways-collection

WikiPathways WP4787

• WikiPathways: WP4787 (classic)
• Species: Homo sapiens
• Scholia: WP4787

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 1
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 19
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 1

http://classic.wikipathways.org/instance/WP4787_r127271 http://rdf.wikipathways.org/Pathway/WP4787_r127271/DataNode/e5049 (GeneProduct)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 19

http://classic.wikipathways.org/instance/WP4787_r127271 "Osteocyte" with graphId d893f
http://classic.wikipathways.org/instance/WP4787_r127271 "Osteoblast" with graphId c2507
http://classic.wikipathways.org/instance/WP4787_r127271 "Osteo-chondro progenitor" with graphId ea262
http://classic.wikipathways.org/instance/WP4787_r127271 "Chondroblast" with graphId e3d35
http://classic.wikipathways.org/instance/WP4787_r127271 "Calvarian bones, clavicles" with graphId d9440
http://classic.wikipathways.org/instance/WP4787_r127271 "Osteoblast" with graphId eed50
http://classic.wikipathways.org/instance/WP4787_r127271 "RUNX2+" with graphId b9988
http://classic.wikipathways.org/instance/WP4787_r127271 "RUNX2+
OSX+" with graphId c27f3
http://classic.wikipathways.org/instance/WP4787_r127271 "Perichondral cell" with graphId de89e
http://classic.wikipathways.org/instance/WP4787_r127271 "SOX9+" with graphId d5eca
http://classic.wikipathways.org/instance/WP4787_r127271 "Myogenic lineage" with graphId dbca1
http://classic.wikipathways.org/instance/WP4787_r127271 "Mesenchymal progenitor/
Mesenchymal stem cell" with graphId db64d
http://classic.wikipathways.org/instance/WP4787_r127271 "Deletion of beta-catenin gene" with graphId fa75d
http://classic.wikipathways.org/instance/WP4787_r127271 "Chondrocyte" with graphId ed28d
http://classic.wikipathways.org/instance/WP4787_r127271 "Preosteoblast" with graphId ff887
http://classic.wikipathways.org/instance/WP4787_r127271 "Adipogenic lineage" with graphId a576b
http://classic.wikipathways.org/instance/WP4787_r127271 "Hypertrophic chondrocyte" with graphId f9554
http://classic.wikipathways.org/instance/WP4787_r127271 "Axial skeleton, extremities" with graphId bc86b
http://classic.wikipathways.org/instance/WP4787_r127271 "Deletion of OSX" with graphId dffd9