wikipathways-collection

WikiPathways WP4784

• WikiPathways: WP4784
• Scholia: WP4784

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 4 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 4 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 3 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 6
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 3
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 6 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 4 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 93
• Number of assertions: 186
• Number of fails: 2

Fails

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 6

http://www.wikipathways.org/instance/WP4784_rr111633 "Newly synthesized
proteoglycan" with graphId c8c96
http://www.wikipathways.org/instance/WP4784_rr111633 "Newly synthesized
proteoglycan" with graphId f1c48
http://www.wikipathways.org/instance/WP4784_rr111633 "Sulfation of
proteoglycan" with graphId a01a9
http://www.wikipathways.org/instance/WP4784_rr111633 "Glycosylated proteoglycan" with graphId f9593
http://www.wikipathways.org/instance/WP4784_rr111633 "Sulfur-containing amino
    acid metabolism" with graphId faf4d
http://www.wikipathways.org/instance/WP4784_rr111633 "Proteoglycan core synthesized in
Rough Endoplasmic Reticulum" with graphId a2815

InteractionTests.possibleTranslocations

Interactions between identical nodes: 3

http://www.wikipathways.org/instance/WP4784_rr111633 http://rdf.wikipathways.org/Pathway/WP4784_rr111633/WP/Interaction/id4dc479a8 "PAPS" (https://identifiers.org/chebi/CHEBI:17980) and 
PAPS" (https://identifiers.org/chebi/CHEBI:17980)
http://www.wikipathways.org/instance/WP4784_rr111633 http://rdf.wikipathways.org/Pathway/WP4784_rr111633/WP/Interaction/idb42bf92 "Sulfate ion (SO42-)" (https://identifiers.org/chebi/CHEBI:16189) and 
Sulfate ion (SO42-)" (https://identifiers.org/chebi/CHEBI:16189)
http://www.wikipathways.org/instance/WP4784_rr111633 http://rdf.wikipathways.org/Pathway/WP4784_rr111633/WP/Interaction/id74467624 "chloride" (https://identifiers.org/chebi/CHEBI:17996) and 
chloride" (https://identifiers.org/chebi/CHEBI:17996)

More details at https://wikipathways.github.io/WikiPathwaysCurator/InteractionTests/possibleTranslocations