wikipathways-collection

WikiPathways WP4577

• WikiPathways: WP4577
• Scholia: WP4577

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 4 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 1
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 3 tests OK!
• GeneralTests
  • curationAndHypothetical: .. all OK!
  • curationAndNeedsWork: .. all OK!
  • curationAndReactome: .. all OK!
  • dataNodeWithoutGraphId: .. all OK!
  • duplicateTitles: .. all OK!
  • emptyLabelOfNodeWithIdentifier: .. all OK!
  • groupsHaveDetail: .. all OK!
  • noTags: .. all OK!
  • nullDataSources: .. all OK!
  • titlesShortEnough: .. all OK!
  • undefinedDataSources: .. all OK!
  • undefinedIdentifier: .. all OK!
  • weirdCharacterTitles: .x we found 1 problem(s):
    • Titles with unexpected characters (only allow alphanumerics and spaces):1
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 5
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 6 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 4 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 93
• Number of assertions: 186
• Number of fails: 3

Fails

DataNodesTests.dataNodesWithoutIdentifier

The following DataNodes have no identifier: 1

http://www.wikipathways.org/instance/WP4577_rr123500 http://rdf.wikipathways.org/Pathway/WP4577_rr123500/DataNode/d06b0 (dihydroxysphingolipids)

GeneralTests.weirdCharacterTitles

Titles with unexpected characters (only allow alphanumerics and spaces):1

http://www.wikipathways.org/instance/WP4577_rr123500 'Neurodegeneration with brain iron accumulation (NBIA) subtypes pathway' has 2 weird characters

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 5

http://www.wikipathways.org/instance/WP4577_rr123500 "Lipid 
Metabolism" with graphId de626
http://www.wikipathways.org/instance/WP4577_rr123500 "Membrane 
remodelling" with graphId d7ea4
http://www.wikipathways.org/instance/WP4577_rr123500 "Pantothenate" with graphId daf3e
http://www.wikipathways.org/instance/WP4577_rr123500 "CoA
" with graphId e4c77
http://www.wikipathways.org/instance/WP4577_rr123500 "Myelin
synthesis" with graphId c4a4e