wikipathways-collection

WikiPathways WP4553

• WikiPathways: WP4553 (classic)
• Species: Homo sapiens
• Scholia: WP4553

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 3
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 1
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 1
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 8 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 120
• Number of assertions: 241
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 3

• http://classic.wikipathways.org/instance/WP4553_r137148 http://rdf.wikipathways.org/Pathway/WP4553_r137148/DataNode/c1121 (Histone H2A)
• http://classic.wikipathways.org/instance/WP4553_r137148 http://rdf.wikipathways.org/Pathway/WP4553_r137148/DataNode/d5da7 (Histone H3)
• http://classic.wikipathways.org/instance/WP4553_r137148 http://rdf.wikipathways.org/Pathway/WP4553_r137148/DataNode/bff2b (MAP/ERK signaling)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Interactions with Labels

Interactions found that involve Labels: 1

• http://classic.wikipathways.org/instance/WP4553_r137148 “Cell proliferation” with graphId b2d90

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels

Possible MIM translocation

Interactions between identical nodes: 1

• http://classic.wikipathways.org/instance/WP4553_r137148 http://rdf.wikipathways.org/Pathway/WP4553_r137148/WP/Interaction/id880267f4 “DUSP6” (https://identifiers.org/ensembl/ENSG00000139318) and DUSP6” (https://identifiers.org/ensembl/ENSG00000139318)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations