wikipathways-collection

WikiPathways WP4474

• WikiPathways: WP4474 (classic)
• Species: Mus musculus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 3
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 1
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 2

Fails

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 3

http://classic.wikipathways.org/instance/WP4474_r129333 "Decreased 
proteases / MMPs" with graphId f4331
http://classic.wikipathways.org/instance/WP4474_r129333 "Adhesion
molecules" with graphId f7d5a
http://classic.wikipathways.org/instance/WP4474_r129333 "Left ventricular
diastolic dysfunction" with graphId af9a2

Possible MIM translocation

Interactions between identical nodes: 1

http://classic.wikipathways.org/instance/WP4474_r129333 http://rdf.wikipathways.org/Pathway/WP4474_r129333/WP/Interaction/idf9f9c3c3 "Il10" (https://identifiers.org/ensembl/ENSMUSG00000016529) and 
Il10" (https://identifiers.org/ensembl/ENSMUSG00000016529)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations