wikipathways-collection

WikiPathways WP4466

• WikiPathways: WP4466 (classic)
• Species: Mus musculus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • UnconnectedPoints: .x we found 1 problem(s):
    • Interactions with unconnected points: 16
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 7
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 8 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• UnicodeTests
  • water: .x we found 1 problem(s):
    • Metabolite can use H₂O instead of H2O: 1
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 21
• Number of tests: 122
• Number of assertions: 245
• Number of fails: 3

Fails

Interactions with unconnected points

Interactions with unconnected points: 16

• http://classic.wikipathways.org/instance/WP4466_r137054

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/UnconnectedPoints

Possible MIM translocation

Interactions between identical nodes: 7

• http://classic.wikipathways.org/instance/WP4466_r137054 http://rdf.wikipathways.org/Pathway/WP4466_r137054/WP/Interaction/id1734cd9 “Glutamine” (https://identifiers.org/hmdb/HMDB0000641) and Glutamine” (https://identifiers.org/hmdb/HMDB0000641)
• http://classic.wikipathways.org/instance/WP4466_r137054 http://rdf.wikipathways.org/Pathway/WP4466_r137054/WP/Interaction/id84f40e0 “Cystine” (https://identifiers.org/hmdb/HMDB0000192) and Cystine” (https://identifiers.org/hmdb/HMDB0000192)
• http://classic.wikipathways.org/instance/WP4466_r137054 http://rdf.wikipathways.org/Pathway/WP4466_r137054/WP/Interaction/id16e74fcd “Glycine” (https://identifiers.org/hmdb/HMDB0000123) and Glycine” (https://identifiers.org/hmdb/HMDB0000123)
• http://classic.wikipathways.org/instance/WP4466_r137054 http://rdf.wikipathways.org/Pathway/WP4466_r137054/WP/Interaction/id2eea309e “Glutamate” (https://identifiers.org/hmdb/HMDB0000148) and Glutamate” (https://identifiers.org/hmdb/HMDB0000148)
• http://classic.wikipathways.org/instance/WP4466_r137054 http://rdf.wikipathways.org/Pathway/WP4466_r137054/WP/Interaction/id56a256eb “Glutamate” (https://identifiers.org/hmdb/HMDB0000148) and Glutamate” (https://identifiers.org/hmdb/HMDB0000148)
• http://classic.wikipathways.org/instance/WP4466_r137054 http://rdf.wikipathways.org/Pathway/WP4466_r137054/WP/Interaction/idec83f534 “Glutamate” (https://identifiers.org/hmdb/HMDB0000148) and Glutamate” (https://identifiers.org/hmdb/HMDB0000148)
• http://classic.wikipathways.org/instance/WP4466_r137054 http://rdf.wikipathways.org/Pathway/WP4466_r137054/WP/Interaction/idc647ba3a “GSH” (https://identifiers.org/kegg.compound/C00051) and GSH” (https://identifiers.org/kegg.compound/C00051)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations

Water chemical formula can use Unicode

Metabolite can use H₂O instead of H2O: 1

* [http://classic.wikipathways.org/instance/WP4466_r137054](http://classic.wikipathways.org/instance/WP4466_r137054)

More details at https://www.wikipathways.org/WikiPathwaysCurator/UnicodeTests/water