wikipathways-collection

WikiPathways WP4331

• WikiPathways: WP4331 (classic)
• Species: Homo sapiens
• Scholia: WP4331

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 18
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 4
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 18

http://classic.wikipathways.org/instance/WP4331_r128749 http://rdf.wikipathways.org/Pathway/WP4331_r128749/DataNode/d4a72 (Apoptosis)
http://classic.wikipathways.org/instance/WP4331_r128749 http://rdf.wikipathways.org/Pathway/WP4331_r128749/DataNode/ce82e (Arteriolar specification)
http://classic.wikipathways.org/instance/WP4331_r128749 http://rdf.wikipathways.org/Pathway/WP4331_r128749/DataNode/d8066 (Cell differentiation)
http://classic.wikipathways.org/instance/WP4331_r128749 http://rdf.wikipathways.org/Pathway/WP4331_r128749/DataNode/cda4d (Cell recruitment)
http://classic.wikipathways.org/instance/WP4331_r128749 http://rdf.wikipathways.org/Pathway/WP4331_r128749/DataNode/e7903 (DLL2)
http://classic.wikipathways.org/instance/WP4331_r128749 http://rdf.wikipathways.org/Pathway/WP4331_r128749/DataNode/c388a (De novo arteriogenesis)
http://classic.wikipathways.org/instance/WP4331_r128749 http://rdf.wikipathways.org/Pathway/WP4331_r128749/DataNode/f98f0 (Integrins)
http://classic.wikipathways.org/instance/WP4331_r128749 http://rdf.wikipathways.org/Pathway/WP4331_r128749/DataNode/f52c7 (Matrix and 
collagen
deposition)
http://classic.wikipathways.org/instance/WP4331_r128749 http://rdf.wikipathways.org/Pathway/WP4331_r128749/DataNode/b037b (Migration)
http://classic.wikipathways.org/instance/WP4331_r128749 http://rdf.wikipathways.org/Pathway/WP4331_r128749/DataNode/ff221 (NO)
http://classic.wikipathways.org/instance/WP4331_r128749 http://rdf.wikipathways.org/Pathway/WP4331_r128749/DataNode/c80a0 (Proliferation)
http://classic.wikipathways.org/instance/WP4331_r128749 http://rdf.wikipathways.org/Pathway/WP4331_r128749/DataNode/af3e8 (Remodeling arteriogenesis)
http://classic.wikipathways.org/instance/WP4331_r128749 http://rdf.wikipathways.org/Pathway/WP4331_r128749/DataNode/c532b (Shear stress)
http://classic.wikipathways.org/instance/WP4331_r128749 http://rdf.wikipathways.org/Pathway/WP4331_r128749/DataNode/a4731 (Sprouting angiogenesis)
http://classic.wikipathways.org/instance/WP4331_r128749 http://rdf.wikipathways.org/Pathway/WP4331_r128749/DataNode/cf120 (Tube formation)
http://classic.wikipathways.org/instance/WP4331_r128749 http://rdf.wikipathways.org/Pathway/WP4331_r128749/DataNode/b77db (VEGF)
http://classic.wikipathways.org/instance/WP4331_r128749 http://rdf.wikipathways.org/Pathway/WP4331_r128749/DataNode/dd43d (Vasculogenesis)
http://classic.wikipathways.org/instance/WP4331_r128749 http://rdf.wikipathways.org/Pathway/WP4331_r128749/DataNode/d1906 (Vessel maturation)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Possible MIM translocation

Interactions between identical nodes: 4

http://classic.wikipathways.org/instance/WP4331_r128749 http://rdf.wikipathways.org/Pathway/WP4331_r128749/WP/Interaction/id959f9a3b "sKitL" (https://identifiers.org/ensembl/ENSG00000049130) and 
sKitL" (https://identifiers.org/ensembl/ENSG00000049130)
http://classic.wikipathways.org/instance/WP4331_r128749 http://rdf.wikipathways.org/Pathway/WP4331_r128749/WP/Interaction/id959f9a3b "sKitL" (https://identifiers.org/ensembl/ENSG00000049130) and 
mKitL" (https://identifiers.org/ensembl/ENSG00000049130)
http://classic.wikipathways.org/instance/WP4331_r128749 http://rdf.wikipathways.org/Pathway/WP4331_r128749/WP/Interaction/id959f9a3b "mKitL" (https://identifiers.org/ensembl/ENSG00000049130) and 
sKitL" (https://identifiers.org/ensembl/ENSG00000049130)
http://classic.wikipathways.org/instance/WP4331_r128749 http://rdf.wikipathways.org/Pathway/WP4331_r128749/WP/Interaction/id959f9a3b "mKitL" (https://identifiers.org/ensembl/ENSG00000049130) and 
mKitL" (https://identifiers.org/ensembl/ENSG00000049130)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations