wikipathways-collection

WikiPathways WP4315

• WikiPathways: WP4315 (classic)
• Species: Homo sapiens
• Scholia: WP4315

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • UnconnectedPoints: .x we found 1 problem(s):
    • Interactions with unconnected points: 6
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 2
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 8 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• UnicodeTests: all 1 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 21
• Number of tests: 122
• Number of assertions: 245
• Number of fails: 2

Fails

Interactions with unconnected points

Interactions with unconnected points: 6

• http://classic.wikipathways.org/instance/WP4315_r134827

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/UnconnectedPoints

Possible MIM translocation

Interactions between identical nodes: 2

• http://classic.wikipathways.org/instance/WP4315_r134827 http://rdf.wikipathways.org/Pathway/WP4315_r134827/WP/Interaction/id709ae542 “(S)-malate” (https://identifiers.org/hmdb/HMDB0000156) and (S)-malate” (https://identifiers.org/hmdb/HMDB0000156)
• http://classic.wikipathways.org/instance/WP4315_r134827 http://rdf.wikipathways.org/Pathway/WP4315_r134827/WP/Interaction/id58b6c32f “Aspartate” (https://identifiers.org/hmdb/HMDB0006483) and Aspartate” (https://identifiers.org/hmdb/HMDB0006483)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations