wikipathways-collection

WikiPathways WP4313

• WikiPathways: WP4313 (classic)
• Species: Homo sapiens
• Scholia: WP4313

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 1
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 4
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 6
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 1

http://classic.wikipathways.org/instance/WP4313_r123507 http://rdf.wikipathways.org/Pathway/WP4313_r123507/DataNode/a2804 (Terpenoid backbone
biosynthesis)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 4

http://classic.wikipathways.org/instance/WP4313_r123507 "Ferroptosis" with graphId bac11
http://classic.wikipathways.org/instance/WP4313_r123507 "Transsulfuration Pathway" with graphId fddb0
http://classic.wikipathways.org/instance/WP4313_r123507 "Fenton reaction" with graphId b3035
http://classic.wikipathways.org/instance/WP4313_r123507 "Ferritin degradation
Released iron" with graphId fbb8b

Possible MIM translocation

Interactions between identical nodes: 6

http://classic.wikipathways.org/instance/WP4313_r123507 http://rdf.wikipathways.org/Pathway/WP4313_r123507/WP/Interaction/idfd73c27c "Fe2+" (https://identifiers.org/chebi/CHEBI:29033) and 
Fe2+" (https://identifiers.org/chebi/CHEBI:29033)
http://classic.wikipathways.org/instance/WP4313_r123507 http://rdf.wikipathways.org/Pathway/WP4313_r123507/WP/Interaction/id37f0d1d8 "Fe2+" (https://identifiers.org/chebi/CHEBI:29033) and 
Fe2+" (https://identifiers.org/chebi/CHEBI:29033)
http://classic.wikipathways.org/instance/WP4313_r123507 http://rdf.wikipathways.org/Pathway/WP4313_r123507/WP/Interaction/idda9e5f1c "Fe2+" (https://identifiers.org/chebi/CHEBI:29033) and 
Fe2+" (https://identifiers.org/chebi/CHEBI:29033)
http://classic.wikipathways.org/instance/WP4313_r123507 http://rdf.wikipathways.org/Pathway/WP4313_r123507/WP/Interaction/id8fbd5c05 "Fe2+" (https://identifiers.org/chebi/CHEBI:29033) and 
Fe2+" (https://identifiers.org/chebi/CHEBI:29033)
http://classic.wikipathways.org/instance/WP4313_r123507 http://rdf.wikipathways.org/Pathway/WP4313_r123507/WP/Interaction/id3f71117d "Fe2+" (https://identifiers.org/chebi/CHEBI:29033) and 
Fe2+" (https://identifiers.org/chebi/CHEBI:29033)
http://classic.wikipathways.org/instance/WP4313_r123507 http://rdf.wikipathways.org/Pathway/WP4313_r123507/WP/Interaction/id42a83318 "Fe2+" (https://identifiers.org/chebi/CHEBI:29033) and 
Fe2+" (https://identifiers.org/chebi/CHEBI:29033)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations