wikipathways-collection

WikiPathways WP4299

• WikiPathways: WP4299
• Scholia: WP4299

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 4 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 4
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 1
  • unknownTypes_Reactome: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 3 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 1
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 6 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 4 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 93
• Number of assertions: 186
• Number of fails: 3

Fails

DataNodesTests.dataNodesWithoutIdentifier

The following DataNodes have no identifier: 4

http://www.wikipathways.org/instance/WP4299_rr120397 http://rdf.wikipathways.org/Pathway/WP4299_rr120397/DataNode/c5911 (15 amino acids)
http://www.wikipathways.org/instance/WP4299_rr120397 http://rdf.wikipathways.org/Pathway/WP4299_rr120397/DataNode/d85dc (Farnesyl transferase)
http://www.wikipathways.org/instance/WP4299_rr120397 http://rdf.wikipathways.org/Pathway/WP4299_rr120397/DataNode/b79fa (Mature lamin A)
http://www.wikipathways.org/instance/WP4299_rr120397 http://rdf.wikipathways.org/Pathway/WP4299_rr120397/DataNode/f5d54 (aaX)

DataNodesTests.unknownTypes

The following DataNodes have Unknown @Type: 1

http://www.wikipathways.org/instance/WP4299_rr120397 http://rdf.wikipathways.org/Pathway/WP4299_rr120397/DataNode/c5911 (15 amino acids)

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 1

http://www.wikipathways.org/instance/WP4299_rr120397 "CaaX group" with graphId fab72