wikipathways-collection

WikiPathways WP4290

• WikiPathways: WP4290 (classic)
• Species: Homo sapiens
• Scholia: WP4290

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 4
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 1
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 2
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 99
• Number of assertions: 200
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 4

http://classic.wikipathways.org/instance/WP4290_r118611 http://rdf.wikipathways.org/Pathway/WP4290_r118611/DataNode/b2ba1 (Amino acid synthesis)
http://classic.wikipathways.org/instance/WP4290_r118611 http://rdf.wikipathways.org/Pathway/WP4290_r118611/DataNode/c28b6 (Cell cycle
Proliferation)
http://classic.wikipathways.org/instance/WP4290_r118611 http://rdf.wikipathways.org/Pathway/WP4290_r118611/DataNode/ded28 (Nucleotide synthesis)
http://classic.wikipathways.org/instance/WP4290_r118611 http://rdf.wikipathways.org/Pathway/WP4290_r118611/DataNode/bd312 (Purine synthesis)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 1

http://classic.wikipathways.org/instance/WP4290_r118611 "pH balance
Nitrogen source" with graphId f0da4

Possible MIM translocation

Interactions between identical nodes: 2

http://classic.wikipathways.org/instance/WP4290_r118611 http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/idd3a00f33 "Lactate" (https://identifiers.org/hmdb/HMDB0000190) and 
Lactate" (https://identifiers.org/hmdb/HMDB0000190)
http://classic.wikipathways.org/instance/WP4290_r118611 http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id35c246c6 "glutamine" (https://identifiers.org/chebi/CHEBI:28300) and 
glutamine" (https://identifiers.org/chebi/CHEBI:28300)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations